Mycobacterium intracellulare ATCC 13950: OCU_29810
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Entry
OCU_29810 CDS
T02158
Name
(GenBank) putative DNA ligase-like protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mia
Mycobacterium intracellulare ATCC 13950
Pathway
mia03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mia00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
OCU_29810
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mia03400
]
OCU_29810
Enzymes [BR:
mia01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
OCU_29810
DNA repair and recombination proteins [BR:
mia03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
OCU_29810
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Alpha_TIF
Motif
Other DBs
NCBI-ProteinID:
AFC44200
UniProt:
H8IQK1
LinkDB
All DBs
Position
3170569..3171459
Genome browser
AA seq
296 aa
AA seq
DB search
MARVDVEITHPDRVLFPADGITKRDLAAYYDQVADTMLAHLRGRALNVQRYPRGIAETGF
IQQDFADSLPDWMSSVRVAKEGGTVEHPVVERPEALRWLANQSCITLHMWQSRRARLDHP
DRLVFDLDPSDGDFAVVRATARATAGALGDLGLACYVQTTGSRGLHVVTPLRADTDFDTA
RQFARDVSEVVAADDPAHRTVEARKDKRDGRVYLDIMRNAYAQTAVAPYSVRARNGAPVA
TPLEWDELDAGRLRADRFTIRDVPKRLAGQPDPWAHMSRHARSLAGPLRRLARLRA
NT seq
891 nt
NT seq
+upstream
nt +downstream
nt
atggcccgcgtcgacgtcgagatcacccacccggaccgcgttctgtttcccgccgacggg
atcaccaaacgcgatctcgccgcctactacgaccaggtggccgacaccatgctggcgcac
ctgcggggccgggccctcaacgtgcagcgctatccccgcggcatcgccgaaacagggttc
atccagcaggatttcgccgattcgctaccagactggatgagtagtgtccgggtggccaag
gagggcggtaccgtagagcatccggtcgtcgaacggccggaggcgctgcgctggctggcc
aatcaaagctgcatcaccctgcacatgtggcagtcgcgccgggcccggctggaccacccg
gaccggctcgtcttcgatctcgacccgtccgacggcgacttcgccgtggtgcgagcgacc
gcacgcgccaccgccggggcgctcggggacctgggcctggcgtgctacgtccagaccacc
ggctcgcgcgggctgcacgtggtgactcccttgcgcgccgacaccgatttcgacaccgcc
cggcagttcgcccgcgacgtcagcgaagtggtcgccgcggacgatcccgcgcatcgcacc
gtcgaggctcgcaaggacaagcgcgacgggcgggtatacctcgacatcatgcgaaacgcc
tacgcgcagacggcggttgcgccgtattcggtgcgggcccgcaacggcgcgccggtagcc
acaccgctggaatgggacgagctggacgccgggcggttgcgggccgaccggttcaccatt
cgagacgtgcccaaacggcttgccggacaaccggatccgtgggcgcacatgtcgcggcac
gcccgctcgctggccggcccgctgcggcgattggcgaggctacgtgcctga
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