Mycobacterium intracellulare ATCC 13950: OCU_43710
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Entry
OCU_43710 CDS
T02158
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mia
Mycobacterium intracellulare ATCC 13950
Pathway
mia03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mia00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
OCU_43710
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mia03021
]
OCU_43710
03400 DNA repair and recombination proteins [BR:
mia03400
]
OCU_43710
Enzymes [BR:
mia01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
OCU_43710
Transcription machinery [BR:
mia03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
OCU_43710
DNA repair and recombination proteins [BR:
mia03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
OCU_43710
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
DUF496
Motif
Other DBs
NCBI-ProteinID:
AFC45590
UniProt:
H8IRR2
LinkDB
All DBs
Position
complement(4591657..4595607)
Genome browser
AA seq
1316 aa
AA seq
DB search
MLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMMVERKAIEDQRDADLEARAQKLEAD
LAELEAEGAKADARRKVRDGGEREMRQLRDRAQRELDRLEEIWTTFTKLAPKQLIVDENL
YRELIDRFGEYFTGAMGAESIQKLIENFDIDAEAEILRDVIRNGKGQKKLRALKRLKVVA
AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVDGDRGEFK
PAAKDEPEVGVYSSPAEAIMASDRGVLSVRAKIKVRLTQLRPPAEIEAELFGANGWQPGD
AWMAETTLGRVLFNELLPVGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG
FYWATRSGVTVSMADVLVPPRKKEILDQYEERAEKVEKQFQRGALNHDERNEALVEIWKE
ATDEVGQALREHYPADNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF
REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCETERGIVVE
LAERQPDGTLIRDPYIETSAYARTLGTDAVDEAGKVVVARGEDLGDPEIEALLAAGITQV
KVRSVLTCTTGTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV
GEDITGGLPRVQELFEARIPRGKAPIADVTGRVRLEEGERFYKITIVPDDGSEEVVYDKL
SKRQRLRVFKHEDGSERVLSDNDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE
VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP
AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA
GTGINRYRNIQVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR
NT seq
3951 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaacttcttcgatgaactccggatcggtctggccaccgcggaggacatc
aggcaatggtcttacggcgaggtcaagaagccggagacgatcaactaccgcacgctgaag
cccgagaaggacggcctgttctgcgagaagatcttcggaccgactcgcgactgggagtgc
tactgcggcaagtacaagcgcgtccgcttcaagggcatcatctgtgagcgctgtggcgtc
gaggtgacccgcgccaaggtgcgtcgcgagcggatgggccacatcgaactggccgcgccc
gtcacgcacatctggtacttcaagggcgtgccgtcgcggctggggtacctgctcgacctg
gcgccgaaggatctcgagaagatcatctacttcgccgcctacgtcatcacctcggtcgac
gaggagatgcgccacaacgagctctcgacgctcgaggccgaaatgatggtggagcgcaag
gccatcgaggaccagcgcgacgccgacctggaggcccgcgcccagaagctcgaggccgac
ctggccgagctggaggccgagggcgccaaggccgacgcgcgccgcaaggtccgcgacggc
ggcgagcgcgagatgcgtcagctgcgcgaccgggcccagcgtgagctggaccggctcgag
gagatctggacgaccttcaccaagctggctcccaagcagctgatcgtcgacgagaacctc
taccgcgagctgatcgaccgcttcggtgagtacttcaccggcgccatgggcgcggagtcg
atccagaagctgatcgagaacttcgacatcgacgccgaggccgagatcctgcgcgacgtc
atccggaacggcaaggggcagaagaaacttcgcgccctgaagcggctcaaggtggtcgcc
gccttccagcagtcgggcaactcgccgatgggcatggtgctcgacgccgtcccggtgatc
ccgccggaactgcgcccgatggtccagctcgacggtggccggttcgccaccagcgacctc
aatgacctgtaccgccgggtgatcaaccggaacaaccgcctcaagaggctgatcgacctc
ggcgcgcccgagatcatcgtcaacaacgagaagcggatgttgcaggagtccgtggacgcg
ttgttcgacaacggccgtcgcggccgcccggtcaccggacccggtaaccgcccgctgaag
tcgctgtccgatctgctcaagggtaagcagggccggttccgtcagaacctgctcggcaag
cgtgtcgactactcgggccgcagcgtcatcgtggtcggcccgcagctcaagctgcaccag
tgcggtctgcccaagctgatggcgctggagctgttcaagccgttcgtgatgaagcggctg
gtcgacctcaaccacgcgcagaacatcaagagcgccaagcgcatggtggagcgccagcgt
ccccaggtgtgggatgtcctcgaagaggtcatcgccgagcacccggtgctgctgaaccgc
gcgcccaccctgcaccggctgggtatccaggccttcgagccgatgctggtggaaggcaag
gcaattcagctgcacccgctggtgtgtgaggcgttcaacgccgacttcgacggtgaccag
atggcggtgcacctgccgctgtccgccgaggcgcaggccgaggcccgcatcctgatgctg
tcctcgaacaacatcctgtcgcccgcgtcgggccgtccgctggccatgccgcgtctggac
atggtgaccgggctgtactacctgaccaccgaggtcgacggcgacaggggcgaattcaag
cccgccgccaaggacgagcccgaggtcggggtgtactcctcgccggccgaggcgatcatg
gcgtccgaccgtggcgtgctgtcggtgcgggccaagatcaaggtgcggctgacccagctg
cgcccgcccgctgagatcgaggccgagctgttcggcgccaacggctggcagccgggggac
gcctggatggccgaaaccacgctgggccgggtgctgttcaacgagctgctgccggtgggc
tatccgttcgtgaacaagcagatgcacaagaaggtgcaggccgccatcatcaacgacctg
gccgagcgctacccgatgatcgtggtcgcgcagaccgtcgacaagctcaaggacgccggt
ttctactgggcgacccgcagcggtgtcaccgtgtcgatggccgacgtgctcgtgccgccg
cgcaagaaggagatcctcgaccagtacgaggagcgggccgaaaaggtcgaaaagcagttc
cagcgtggcgctttgaaccacgacgagcgcaacgaggcgctggtggagatctggaaggaa
gccaccgacgaggtcggtcaggcgctgcgtgagcactacccggccgacaacccgatcatc
acgatcgtcgactcgggtgccacgggtaacttcacccagacccggacgctggccggcatg
aagggtctggtgaccaaccccaagggtgagttcatcccgcgtccggtcaagtcgtcgttc
cgcgagggcctgaccgtgctggagtacttcatcaacacccacggcgcccgaaagggcctg
gcggacaccgcgttgcgtaccgccgactccgggtacctgacccgtcgtctggtggacgtg
agccaggacgtcatcgtccgcgagcacgactgcgagaccgagcggggcatcgtcgtcgag
ctggccgagcgtcagcccgacggcaccctgatccgcgacccgtacatcgaaacctcggcg
tacgcacggactttgggcaccgacgcggtcgacgaggccggcaaggtcgtcgtcgctcgc
ggcgaggacctgggtgacccggagatcgaggcgctgctggcggccggcatcacgcaggtc
aaggtgcgctcggtgctgacgtgcaccaccggcaccggggtgtgcgcgacctgttacggg
cggtccatggccaccggaaagctggtcgacatcggcgaggccgtcggtatcgtcgcggcc
cagtccatcggtgagcccggtacgcagctgaccatgcggacgttccaccagggtggtgtc
ggtgaggacatcaccggcggtctgccccgggtccaggagctgttcgaggcccgcatcccg
cgcggcaaggcgccgatcgccgacgtcaccgggcgggtccgcctcgaggagggcgagcgc
ttctacaagatcaccatcgttcccgacgacgggagcgaggaggtcgtgtacgacaagctc
tccaagcggcagcggctgcgcgtgttcaagcacgaagacggttccgagcgggtgctctcc
gacaacgaccacgtcgaggtgggccagcagctgatggaaggctcggccgacccgcacgag
gtgctgcgcgtgcagggcccccgcgaggtgcagatccacctggtccgcgaggtccaggag
gtctaccgcgcgcagggtgtgtcgatccacgacaagcacatcgaggtgatcgttcgccag
atgctgcgccgcgtcaccatcatcgactcgggctcgacggagtttttgcccggctcgctg
atcgaccgcgcggagttcgaggcggagaaccgccgggtggtggccgagggcggcgagccc
gccgccggccgtccggtgctgatgggtatcacgaaggcgagcctcgccaccgactcgtgg
ctgagcgcggcgtcgttccaggagaccacgcgagtgctgaccgatgcggcgatcaactgc
cgcagcgacaagctcaacggtctgaaggagaacgtgatcatcggaaagctgatcccggcc
ggtaccggcatcaaccgctaccgcaacatccaggtgcagccgaccgaggaggcccgggcc
gccgcgtacacgatcccgtcctacgaggatcagtactacagcccggacttcggccaggcc
accggcgccgcggttccgttggacgactacggctacagcgactaccggtag
DBGET
integrated database retrieval system
