Mycobacterium intracellulare ATCC 13950: OCU_44120
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Entry
OCU_44120 CDS
T02158
Name
(GenBank) exodeoxyribonuclease V, alpha subunit
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
mia
Mycobacterium intracellulare ATCC 13950
Pathway
mia03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mia00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
OCU_44120
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mia03400
]
OCU_44120
Enzymes [BR:
mia01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
OCU_44120
DNA repair and recombination proteins [BR:
mia03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
OCU_44120
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
AAA_30
UvrD_C_2
AAA_11
Viral_helicase1
UvrD-helicase
AAA_22
NAT10_TcmA_helicase
RecD_N
SH3_13
nSTAND3
AAA_16
AAA_28
Mg_chelatase
AAA_29
TrwB_AAD_bind
T2SSE
SRP54
NTPase_1
SLFN-g3_helicase
MukB
Motif
Other DBs
NCBI-ProteinID:
AFC45631
UniProt:
H8ISI6
LinkDB
All DBs
Position
4639352..4641073
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AA seq
573 aa
AA seq
DB search
MTAEVMFATGLLRTFTDAGVFEAADVHVAQRLTALTGESDERVALAVALVVRALRGGSVC
VDLRAAPGLLGDADLPWPGADDWLAAVRASALLGPPPVLRFFGDLLYFDRYWLEEEQVCT
DLLALSAPPVGIESSSYERLFEPGYEEQRAAAEIAVSHAVTVLTGGPGTGKTTTIARLLA
LLLEHAERAGMPPPRIALAAPTGKAAARLAEAVAAGARRLGAADRARLAGLSGTTLHRLL
GPRPDTSVRFKHNRANRLPHDVIVVDETSMVSLTMMARLAEAVRPDSRLILVGDPDQLAS
VEAGAVLADLVDGLSARGDVRVAALRTPHRYGTSIGALAEAIRVGDADRVVELLAAGGEH
VEWVDAQRPADRLREVLVAHALRLRSAALLGAADEALATLDEHRLLCAHREGPYGATHWN
TLVQKWIAEATGQPAWSQWYAGRPLLVTANDYGLRLYNGDTGVAVAGAEGLRAVIAGASG
PLDFATSRLGEVETMHAMTIHKSQGSQADEVTVLIPPEDSRLLTRELFYTAVTRAQTRVR
VVGPEASVRAAIERRAMRATGLRQRLRADAAAT
NT seq
1722 nt
NT seq
+upstream
nt +downstream
nt
atgacggcggaggtgatgttcgcgaccggattgctgcgcacgttcaccgatgccggcgtc
ttcgaggcggcggacgtgcatgtggcgcaacggcttaccgcgctcaccggcgagtccgac
gaacgggtggccctagcggtcgcgctggtggtacgcgcgctgcggggcggttcggtctgc
gtcgatctccgcgcggcgcccgggctgctcggcgacgccgacctgccgtggcccggcgcc
gacgactggctggcggcggtgcgggccagcgcgttgctcgggccgcctccggtgctgcgg
tttttcggcgatctgctgtacttcgaccggtactggctcgaggaggagcaggtgtgcacc
gacctgctggccttgtcggcgccgccggtcggcatcgaatcgtccagttacgaacggctt
ttcgagcccgggtacgaggagcagcgggccgccgccgaaatcgcggtgtcgcacgcggtg
accgtgctgaccggtggccccggcaccggcaagaccaccacgatcgcgcggctgctcgcc
ctgctcctcgagcatgccgagcgggccgggatgccgccgccgcggatcgcgctggccgca
ccgaccggcaaggcggcggcgcggctggccgaggcggtggccgcgggggcccgacggctc
ggcgcggccgaccgggcgcggctggccggcctgtccgggaccacgctgcaccggctgctg
ggtccccggccggatacgtcggtgcggttcaagcacaatcgcgccaaccggctgccgcac
gacgtcatcgtggtggacgagacgtcgatggtgtcgttgacgatgatggcccggctggcc
gaagcggtccgcccggactcccggttgattctggtcggcgacccggaccagttggcctcg
gtggaggcgggcgccgtgctggccgacctggtggacgggctgtccgcccgcggcgacgtg
cgggtggccgccctgcgcacgccgcaccgatacggcacgtcgatcggcgcgctggccgag
gcgattcgggtcggcgacgcggaccgggtggtggagctgctggcggccgggggcgagcac
gtcgagtgggtggatgcacagcgcccggccgatcggctgcgcgaggtgctcgtcgcgcac
gcgctgcggctgcggtcggccgcgctcctgggcgcggccgacgaggcgctggccacgctg
gacgaacaccggctgctgtgcgcgcaccgcgagggcccgtatggggcgacacactggaac
acgttggtgcagaagtggattgccgaggcgacggggcagccggcatggtcgcagtggtac
gccgggcgcccgctgctggtgaccgccaacgactacggcctgcggctctacaacggcgac
accggtgtggcggtggccggcgcggagggcctgcgggcggtcatcgccggtgccagcggg
ccgctagacttcgcgaccagccgtctcggcgaggtggagacgatgcacgccatgaccatc
cacaagagtcagggcagccaggccgacgaggtgaccgtgctgataccgccggaggattcg
cgactgctgacgcgggaactgttctacacggccgtgacccgggcgcagaccagggtgcgg
gtggtggggcccgaggcctcggtgcgcgcggcgatcgagcgccgggcgatgcgggccacc
ggattgcggcaacggctgcgggccgacgccgccgcgacgtga
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