Candidatus Beckwithbacteria bacterium GW2011_GWC1_49_16: UY43_C0001G0208
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Entry
UY43_C0001G0208 CDS
T04022
Name
(GenBank) rho, transcription termination factor Rho, transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
mib
Candidatus Beckwithbacteria bacterium GW2011_GWC1_49_16
Pathway
mib03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mib00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
UY43_C0001G0208
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mib03021
]
UY43_C0001G0208
03019 Messenger RNA biogenesis [BR:
mib03019
]
UY43_C0001G0208
Transcription machinery [BR:
mib03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
UY43_C0001G0208
Messenger RNA biogenesis [BR:
mib03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
UY43_C0001G0208
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Spore_III_AA
AAA_25
NACHT
Mor
AAA
Motif
Other DBs
NCBI-ProteinID:
AKM78956
LinkDB
All DBs
Position
169850..171100
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AA seq
416 aa
AA seq
DB search
MTNRPAFRKPMRRGPVGRMRPAQGVVARPLVVDNRMIPDAQLPTESVSGVLEITSEGHGL
LRPNFSPSDRDVYISSSQIRRFRLRPGDVVEGPARKPKENERYWGLLKVEKVNGKDFDEG
LRRPDFDRLTPIFPKEKLVLETDKGSVAARVIDLVAPIGKGQRGLIVSPPKAGKTTILKD
IAHGIAENSPKVHLMAVLVGERPEEVTDIRKSVKGEVAASNFDEAAERQTKVAEIALDRA
KRLVELGNDVVILLDSITRLARAYNLAIPTSGRTLSGGFDPAALYPPKRFFGAARNFEPF
KVEGKEVGGSLTIIGTALVDTGSRMDELIYEEFKGTGNMELHLSRKLQERRMFPAINLQR
SGTRQEQLLFNEKDYEKIRTMRRMIDVLDDNEQTEVMLERLRKTKSNKEFLSSLGK
NT seq
1251 nt
NT seq
+upstream
nt +downstream
nt
atgactaaccgcccggcatttaggaaaccgatgaggcgcggtccggtaggcagaatgagg
ccggcccagggcgtggtggccagacccttggtagttgacaaccggatgattccggatgcc
cagcttcccacagagagtgttagcggggtgttggagataaccagcgaaggtcacggatta
ttgcggccgaatttttcgcccagcgacagagacgtttatatttcttcgtcgcaaatcagg
cgttttcgcttgcggccgggagacgtggttgagggtccggccagaaaacccaaggaaaac
gagcgctactggggtttacttaaagtagaaaaggttaatggtaaggattttgacgagggg
ttaagaaggcctgattttgaccggctgacgccgattttccctaaagagaagttggtgctg
gagacggataaaggttcggtggcggccagagtcatcgacttggtggcgccgatcggtaaa
ggccagcgcggcctgatcgtctcgccgcccaaagcgggcaaaacgacgattttaaaggat
attgcccatgggattgccgaaaacagccccaaggtgcacctgatggcggtgttggtaggc
gagcggccggaagaagtgaccgatattagaaagtcggttaagggtgaagtggcggcgtct
aactttgatgaggcggcagaaaggcaaaccaaagtagccgagattgccttggatcgagct
aaacgtttagtagagttgggcaacgacgtggtgatacttcttgattcgattaccaggtta
gcccgggcttacaacttggccattcccacgtcgggcaggactttgtccggcgggtttgac
ccggcggctttatatcccccgaagcgcttttttggggcggcacgaaactttgagccgttt
aaagtcgagggtaaggaagttggtggcagtttaactattatcggcacggctttggtggac
acgggttcgcggatggacgagctcatctacgaagagtttaagggtacgggcaatatggaa
cttcatctgtcgcgtaagcttcaggagcggcggatgttcccggcgatcaacctccagcgc
tccggcaccaggcaagagcaactgctgtttaacgagaaagactatgaaaagataagaacc
atgcggcggatgattgacgttttggacgacaacgagcagacggaagtgatgctggaacgc
ttgcgaaaaaccaaatcgaacaaggagttcttgagtagtctggggaagtag
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