Candidatus Beckwithbacteria bacterium GW2011_GWC1_49_16: UY43_C0001G0334
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Entry
UY43_C0001G0334 CDS
T04022
Name
(GenBank) topoisomerase I, DNA topoisomerase I protein
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
mib
Candidatus Beckwithbacteria bacterium GW2011_GWC1_49_16
Brite
KEGG Orthology (KO) [BR:
mib00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mib03032
]
UY43_C0001G0334
03400 DNA repair and recombination proteins [BR:
mib03400
]
UY43_C0001G0334
Enzymes [BR:
mib01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
UY43_C0001G0334
DNA replication proteins [BR:
mib03032
]
Prokaryotic type
DNA Topoisomerases
UY43_C0001G0334
DNA repair and recombination proteins [BR:
mib03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
UY43_C0001G0334
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Toprim_4
Zn_ribbon_recom
Myosin_head
MRP-S34
Motif
Other DBs
NCBI-ProteinID:
AKM79074
LinkDB
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Position
281391..283376
Genome browser
AA seq
661 aa
AA seq
DB search
MKLIVVESPTKAKTLSRFLGEDYQIEASMGHIKDLPKSKLGVDLEKNFLPDYQVIEGKKK
VVAALKKAANGVSGVILATDPDREGEAIARHVQEVLGANNQFSNSNFQRIVFHEITKTAV
LGALAHPGKVDLKLVDAQTARRVLDRLVGYKLSPILWKKVRRGLSAGRVQSVAVRLIVER
EKEIEAFSAIEYWEIKAHLRATKGEVWFDLVKVNGKKLEVGNKEQADKIVEDLEKAKYRL
IEVAEKEVKRYPAPPLITSTLQRSAGNRFGWSAKKTMREAQRLYEEGLITYHRTDSVNLS
VVAVEKVRKMIEERYGGEYLPEKAVFYKAKSKMVQGAHEAIRPTGLSTKHEARSTKLGKG
AVLLYRLIWDRFVASQMKPAIVKRTIATGEAKTDSLYLFKAKGERLVFDGWSKINEKINL
LTVQELPQLTEGEALQLIKLQPEQKFTQPPARFTEASLIKELEQKGIGRPSTYAPIISTI
LMRQYVEKEERSLKPTVIGLTVTEFLLKHFAGVMDYEFTAKMENNLDRVAEGKVVWVKVV
EEFYRPFSERLTKTEENAKRVKIAVEKTGEACPECKQGLPAGRQGEVVVRTGRFGKFLSC
SRFPECKYTANFKEVVSGVVCDKCGGQVVVKKTKKGKKFYGCANYPKCDWASWSKPKPNK
S
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atgaaattaattgtggtggagagtccgacaaaggccaagacattgtctcgatttttaggg
gaagactatcagattgaggcgtcgatggggcacatcaaggatttacctaagagcaagttg
ggagtcgatcttgaaaaaaactttttgcccgactaccaggtaatcgagggcaagaaaaaa
gtggtggcggccttgaaaaaggcggccaatggggtaagcggggtgattttagccactgac
ccggaccgggaaggagaagcgattgcgcgtcatgttcaagaggtgttgggcgcaaataac
caattttcaaactccaattttcaaagaatcgtctttcatgagattactaaaacagcggtg
ttgggggcgttggcgcacccgggaaaggtggatttaaagctggtagatgcccaaaccgcc
cgcagggttttggaccggttggttggatataaattgtcgccaattttatggaaaaaggtt
cgtagaggtctatctgccggtagggtacaaagcgtggcagtacgcttaattgttgagcgg
gagaaagaaatcgaggctttttcggctatcgagtattgggagattaaagcacatcttcgc
gcgaccaaaggcgaggtttggtttgatttggttaaggtcaatggcaagaagcttgaagtg
gggaataaagagcaagcagataagattgttgaggatcttgaaaaggctaagtatagacta
atagaggtagcggagaaagaggtcaagcgttatccagcgccgccactgattacctcgact
ttgcagaggagtgcgggcaataggtttggttggagcgccaaaaagactatgagagaggcc
caaagactgtacgaagagggtttgattacctatcatcggacagatagcgttaatttatct
gtggttgctgtggaaaaggtgaggaaaatgattgaggaaagatacggaggcgagtatttg
ccggaaaaagcggttttttataaagccaagtctaaaatggtccaaggagcacacgaagcg
atacggcctactgggctaagcacaaaacatgaagcacgaagcacgaaactaggcaaaggc
gcggttttgctttaccggttgatttgggataggtttgtggcatcacaaatgaagccggca
atagtcaaaagaactattgccactggtgaagcgaaaacggactcactttatttatttaaa
gcgaagggcgagcggttggtgtttgacggctggtcaaaaatcaacgaaaaaattaattta
ctgacagttcaggaattacctcaactaacagagggagaagcgcttcaattaattaaatta
caaccggagcaaaaatttacccaaccgccggcccgctttaccgaagccagtttaattaaa
gaattggagcaaaagggaattggcaggccgtctacttatgcgccgattatttctaccatt
ctaatgcgtcagtacgtagaaaaagaagaaaggagtttgaagccgacggtgattggattg
acggtgacggagtttttgcttaaacacttcgcgggcgtgatggattacgagtttacggct
aaaatggaaaacaatttggatcgggtggcggagggcaaagtggtttgggtcaaggtggta
gaggagttttatcggcctttttccgagaggctaaccaaaactgaggaaaatgccaagagg
gttaaaatcgcggtagaaaaaaccggtgaggcctgcccggagtgtaaacaaggcctgcct
gccggcaggcagggagaggtggtagtcagaaccggaaggtttggcaagtttttatcttgc
tcgcggtttccggagtgcaaatacacggctaatttcaaagaggtggtcagcggagtggtt
tgcgacaagtgcggcggccaggtggtggtgaaaaagaccaaaaagggtaaaaagttttac
ggttgcgccaattaccccaagtgcgattgggccagctggagcaagcccaaaccaaacaaa
agttga
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