Candidatus Beckwithbacteria bacterium GW2011_GWC1_49_16: UY43_C0001G0560
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Entry
UY43_C0001G0560 CDS
T04022
Name
(GenBank) polymerase III catalytic subunit, DnaE type, DNA polymerase III subunit alpha protein
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
mib
Candidatus Beckwithbacteria bacterium GW2011_GWC1_49_16
Pathway
mib03030
DNA replication
mib03430
Mismatch repair
mib03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mib00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
UY43_C0001G0560
03430 Mismatch repair
UY43_C0001G0560
03440 Homologous recombination
UY43_C0001G0560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mib03032
]
UY43_C0001G0560
03400 DNA repair and recombination proteins [BR:
mib03400
]
UY43_C0001G0560
Enzymes [BR:
mib01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
UY43_C0001G0560
DNA replication proteins [BR:
mib03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
UY43_C0001G0560
DNA repair and recombination proteins [BR:
mib03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
UY43_C0001G0560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
T2SSK
DUF655
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
AKM79281
LinkDB
All DBs
Position
complement(479377..482829)
Genome browser
AA seq
1150 aa
AA seq
DB search
MADFVHLHVHSEYSLLDGLSDIDELIARAQALKMKSLALTDHGVMYGAVKFQNAAKKAGL
KPIIGMEGYLTTADMADRSPGVNKKTFHQLLLARDITGYKNLMQLTTIAHLEGYYYRPRF
DWDTLKKYSKGLIATSSCMQGIIPKCLRDGNEKEAKAWCKKFIEAFGEDFYLELQSHQGI
PELKGLNQKILDLSRQLGIPVVATNDVHYVNAEDAKAQDALLAIQTKTVLSDENRLTMIG
SPDYYLKSASEMADLFPETPDALENTLKIADKCNVEIPTGKWILPAFPLPSGFKKPEKYL
TKLAQEGLKKRFTPIKKDVQKRLDYELDVINDKGFATYFLIVADFVNWAKKNHVRVGPGR
GSVAGSLVAYALRITSINPIEHNIPFERFLNPERPSPPDIDLDFADDRRDLVIDYVANKY
GKDKVAQIITFGTMEARGAIRDIGRVLGMPYSDPDRIAKLIPFGFSLEEALVNSTELQEY
YKQDDFKELLNLAKKVEGTARHASTHAAGVVIGDKPLTEYTPLQLETKNERVMTQYDMYS
LDCNISPDAIGLLKIDFLGLRNLTILQKAIEFVEEQSGDKVDISEIPLDEPAVFKLLSTG
NTIGIFQLESAGMRRVARKLKPSRFSDITAMVALYRPGPMELIDDFIAGKLNPSRVRYPH
PDLKEVLEETYGIAVYQEQALQIANIMAGYSLGEADILRRAIGKKKRALMVKEKEKFIRQ
AREKGYSKEIADRVWGYIDKFAGYGFNKAHATAYAMIAYQTAYMKALYPVEFMAALLTAE
SGNKDKIPVAVEESKQMGIAVLPPDINQSKVGFTIIKDKHSLNQKSIRFGLSAIKNVGVA
AIKAILAQRDKSPFKSLTDFCRRVDQQKVNKKVLESLIQVGALDAFGKRSAMLVGLEAIR
QKAAQYQKELTSPQTSLFGAARDNPGSHFTDVLPEVAELGKTDLLNFERQLLGFYLTEHP
MADALKKIRKQASHQVSELDRQVHLNRQVLLGGVLKNLKTIRTKKSNQLMAFAELEDETG
TIELVIFPKVYAAAAKFLAPDRPLLITGKVDFKDKLAILVDSVKSPQSQTPKTTDTRSPN
HTIYLNSSTPKNTMVKLKNLLESHPGDQPVSINLSQNGYSQKIRLPYGVDFTTTEEKIIQ
LIKPFKGRID
NT seq
3453 nt
NT seq
+upstream
nt +downstream
nt
atggctgacttcgttcatcttcacgttcactccgaatactccctgttagacggactctcc
gacatcgacgaactcatcgcccgcgcccaagctctaaagatgaagtccctggccctgacc
gaccacggcgtcatgtacggcgcggttaagttccaaaacgccgccaaaaaggccgggcta
aaaccgatcatcggcatggagggctacctgactaccgctgatatggccgaccgctccccc
ggagtcaataaaaaaacctttcaccagctgcttctggcccgcgacatcaccggctataaa
aacctaatgcagctgaccactatcgcccaccttgaaggctactattaccgcccccgcttt
gactgggacactctgaaaaaatactctaaaggactgatcgccacttcctcctgcatgcag
ggaattatccccaaatgcttaagagacggcaacgaaaaagaagccaaagcctggtgcaaa
aagtttatcgaagcctttggcgaagatttttatttagaacttcaatcccaccagggtatt
cccgagctgaaaggtttaaaccaaaaaattcttgacctgtcgcgccagcttggcatcccg
gtggtggccaccaacgacgtccattacgtcaatgccgaagacgccaaggcccaggacgca
cttctggccatccagaccaaaactgttctctccgatgaaaaccgcctgaccatgatcggc
tcccctgactactatttaaaatcggcttcggaaatggcggatcttttccccgagactccc
gatgctttggaaaataccctcaaaatcgccgacaaatgtaatgtggagattcccaccggt
aaatggatcctgcccgccttccctttgccttcaggcttcaaaaaaccggaaaagtactta
actaaactcgcccaagagggtttaaaaaaacgctttactcctatcaaaaaagacgtccaa
aagcgcctcgactacgagttagacgttatcaacgacaaaggctttgccacttactttctg
atcgtcgctgactttgtcaactgggccaagaaaaaccacgtccgggtcggccccgggcgg
ggttcagtcgccggctcattggtcgcctacgctttgcggattacctcaatcaacccgatc
gaacacaacattccttttgagcgctttttaaaccccgagcgccccagtcctccggacatc
gaccttgactttgccgacgaccgcagggacttagtcatcgactacgtcgccaacaagtac
ggcaaagacaaggtggcccagatcattaccttcggcaccatggaggcccgcggcgccatc
agagacatcggccgggtcttgggcatgccctactccgaccccgaccgcatcgccaaactc
attccctttggcttttctttagaagaggcactggtcaactccaccgaactccaggaatac
tacaaacaggacgactttaaagagctacttaatctggctaaaaaagtcgagggtaccgcc
aggcacgcttcgacccacgccgccggcgtggtcatcggtgacaaacctttgaccgagtac
accccgctgcagcttgagactaaaaacgaacgggtgatgacccaatacgacatgtactcg
ttagactgcaacatctcgcccgacgccattggtttgttaaaaatcgactttttgggcttg
agaaacctgaccattctccaaaaggcgatcgagtttgtcgaggagcagtcaggggataag
gtcgacatctccgaaatccccttagacgaaccggcggtgtttaagcttttgtcgacgggc
aacaccatcggcatttttcaattagagtcggccggcatgcgccgggtcgccagaaaatta
aaaccttcccgcttttccgacatcaccgccatggtggctctttaccgccccggcccgatg
gagctaatcgacgactttattgccggaaaactaaatccctcccgcgttcgctacccccac
cccgacttaaaagaagttttggaagaaacctacggcatcgccgtctaccaggagcaggct
ttacaaattgccaacatcatggccggctactccctgggcgaggccgatattttgcgccgg
gccatcggcaagaaaaaacgggctttaatggtcaaagagaaagaaaaatttatccgccag
gctcgggaaaaaggttattccaaggaaatcgccgaccgcgtctggggctacatcgacaaa
tttgccggctacggtttcaacaaagcccacgccaccgcttacgccatgatcgcttaccag
accgcctacatgaaagccctctacccggttgagttcatggccgcactgctcaccgccgag
tccggcaacaaagacaaaatccccgtcgccgtcgaagaatcaaagcaaatgggcattgcc
gttttgcccccggatattaaccagtccaaagtcggtttcaccatcatcaaagacaaacat
tctttaaaccaaaagtccatccgctttggtttatctgccataaaaaacgtcggcgtcgcc
gccatcaaagctatcttagctcaaagggataaaagcccctttaaatctttgactgacttt
tgccgccgcgtcgaccagcaaaaagtcaacaagaaagtgctcgaaagcctcatccaagtg
ggggcactggacgctttcggcaaacgctcggcgatgctggtcgggctggaagccatccgc
caaaaagcggctcaataccaaaaagagcttaccagtccccaaacttcgctctttggcgca
gcccgcgacaaccccggcagccactttaccgacgtcctccctgaagtcgccgaacttggc
aaaaccgacctccttaactttgagcgccagctcttgggtttttacttaaccgagcacccc
atggccgacgctttgaaaaaaatcaggaaacaagcctcccaccaagtttccgaactcgac
cgccaagtccacttgaaccgccaggtacttttgggcggagttttgaaaaacttaaaaacc
atccgcaccaaaaaatcaaaccagttgatggcttttgccgaactcgaagacgaaaccggc
accattgagttggtcattttccctaaagtctacgccgccgccgccaagtttttagctccc
gacaggcctttactgatcaccggcaaagttgactttaaggacaagctggcgattctggtt
gacagcgtcaaatctccccagtcccaaactccaaaaaccactgacaccaggagcccaaac
catacaatctaccttaattcttccactcccaaaaataccatggtcaaattaaaaaattta
cttgaatcccaccccggcgatcaacccgtttccatcaatttgagccaaaacggctacagc
caaaaaatccgcctgccctacggcgtcgactttactacaaccgaagagaaaatcattcag
ctgatcaaacccttcaaaggcaggattgactaa
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