Candidatus Beckwithbacteria bacterium GW2011_GWC1_49_16: UY43_C0001G1042
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Entry
UY43_C0001G1042 CDS
T04022
Name
(GenBank) hypothetical protein
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
mib
Candidatus Beckwithbacteria bacterium GW2011_GWC1_49_16
Pathway
mib03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mib00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
UY43_C0001G1042
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mib03019
]
UY43_C0001G1042
Messenger RNA biogenesis [BR:
mib03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
UY43_C0001G1042
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
AKM79756
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All DBs
Position
complement(929446..930777)
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AA seq
443 aa
AA seq
DB search
MNKLQIIPLGGGPGTVTKNMFVYQWGQDALIVDCGIGFPEDKTSDELLLPDISYLKDQRL
TLHGLLLTHGHDDHQAGLPYILPQLSSLPIFGSRLTAAFASDRLAEHRQNYKITPIKESA
RLTLGPFTVEPILVTHSVPDTFHFVITTPVGAIYHGSDFKFDLTPLDQRPPDFQKIVNLA
RSGILCLLSDSLRSERPGFSQSESTLTTAIHRELSHCPGRLLFTTMSSNIHRIQQAIDVA
ASHQRKVAFIGRSLERNVATAVRFGFLKLPKNTVINKKTIKRYPARRLALIVAGSQGQET
SSLTRYAENDHSLLKPQPGDKVIFSADIIPGNEQLVFQVIDELAKRNVSVAYSEVNDDLH
VSGHASAKELQLLMLLTSPDYLYPIGGGFRHLKRYQELAIEVGFSPHQVMLPRAGQIVEF
DSTGKGNLGPTIKLKDVRVKQDG
NT seq
1332 nt
NT seq
+upstream
nt +downstream
nt
atgaataaacttcaaatcattcctttgggcggtggcccgggcacagtcactaaaaacatg
tttgtctaccagtggggccaagatgccctcatcgtcgattgcggcatcggttttcccgag
gacaaaaccagtgacgaacttttgttgcccgacatttcttatctcaaagatcaaaggctt
accctccacggtctgcttttaacccacggccacgacgatcaccaggccggcctgccttac
atcttaccccagctgtcctcactgcctatttttggctcgcgcctcaccgccgcttttgcc
tccgacaggctagccgaacaccgccaaaactataagatcactccgatcaaagaatcggcc
agactgactctgggtccctttaccgtcgagcccattttggttacccactctgtccccgac
acctttcattttgtcatcaccacaccggtgggcgccatctaccacggcagcgattttaag
tttgatttaacccccttggaccaaagaccgcccgactttcagaaaatcgtcaacctggca
cgcagcggcattctctgcttgctctccgactctttgcgctccgagcgccccggcttttct
cagtccgagagcactttaaccaccgccattcaccgtgaattaagccactgccccggcaga
cttctttttaccacgatgtcgtcaaacatccaccgcatccagcaagcaatcgacgtggct
gcttcccatcaaagaaaagtcgctttcatcggccgctccctggaaagaaacgttgctacc
gccgtccgctttggtttcttgaagttgcccaaaaataccgtcattaacaaaaaaaccatc
aagcgctacccggctcgccgtttagcgcttattgtcgccggcagccaggggcaagaaacc
tcgtctttgacccgctacgccgaaaacgaccacagcctgttaaaaccccagccgggggac
aaagtgattttctccgccgacattattcccggcaacgagcagttggttttccaggtcatc
gacgagctggccaaaagaaacgtctctgtggcctacagcgaggtcaatgacgacctccac
gtttccgggcacgcctcggccaaagaactccagctgttgatgcttttgacttcgcctgac
tatctttatcccatcggcggcggttttagacacctcaagcgctaccaggagttggccatc
gaggtcggcttttctccccaccaagtcatgctcccccgagccggccaaattgtcgagttt
gactccactggcaagggcaatttgggccccaccattaaattaaaagacgttcgcgtcaaa
caagatggctaa
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