Microbacterium sp. BDGP8: P6897_10040
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Entry
P6897_10040 CDS
T11498
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mibd Microbacterium sp. BDGP8
Pathway
mibd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mibd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
P6897_10040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mibd03019
]
P6897_10040
03009 Ribosome biogenesis [BR:
mibd03009
]
P6897_10040
Enzymes [BR:
mibd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
P6897_10040
Messenger RNA biogenesis [BR:
mibd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
P6897_10040
Ribosome biogenesis [BR:
mibd03009
]
Prokaryotic type
rRNA helicases
P6897_10040
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DeaD_dimer
DbpA
ResIII
CMS1
UvrA_inter
adh_short
DUF7853
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
WHE35039
LinkDB
All DBs
Position
complement(2090425..2092251)
Genome browser
AA seq
608 aa
AA seq
DB search
MSTSAEQSVPESVDEPPVITFRDLGLGEQVLKALSDVGYETPSAIQAATIPTLLEGRDVV
GLAQTGTGKTAAFALPILDRLDLTQKTPQALVLAPTRELALQVCEAFEKYASRTKGVHVL
PVYGGQGYGVQLSALRRGVHVIVGTPGRIMDHLDKGTLDLSELKYLVLDEADEMLKMGFA
EDVETILADTPDTKQVALFSATMPAAIRRMSKQYLNDPEEITVASKTTTSSTITQRYLIV
SYQQKIDALTRILEVENFEAMIVFARTKSATEEVAEKLRARGYSAAAINGDVAQVQRERT
VNQLKSGKLDILVATDVAARGLDVERISHVVNFDISTDTESYVHRIGRTGRAGRTGDAIS
FVTPRERGLVNAIERATRQPLTQMQLPSVDEVNVTRLSRFDDRITAALEDTDRIERFRDI
VAHYVRHHDVPEVDVAAALAVVAQGETPLLLEPDPEPRARAPREDRAPRSFDRDDRDGRP
ERRPRASNPNMTTYRIAVGKRHRVEPRQIVGALANEGGLSRGDFGAIQIRPDFSLVELPS
DMPHSTLDRLADTRISGKAIEIRVDTGGPSRSSRGRFDRDDRPRDRDRDGDRDDRPARKP
RHRSETRD
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
gtgtccacttctgctgaacagtctgtgcccgagtccgtcgacgagccgcccgtcatcact
ttccgcgacctcgggctgggagagcaggtgctcaaggcgctctccgacgtgggctacgag
accccgtcggcgatccaggccgcgaccatcccgacgctcctcgaggggcgcgatgtcgtc
ggcctcgcgcagaccggtaccggcaagaccgcggctttcgcgctgcctatcctcgaccgg
ctcgacctgactcagaaaaccccgcaggccctcgtgctcgccccgacccgcgagctcgcg
ctgcaggtctgcgaggcgttcgagaagtacgcgtcgcgcacgaagggtgtccacgtcctc
ccggtctacggcggtcagggctacggcgtgcagctctcggcgctgcgccggggagtccac
gtcatcgtcggaacgcccgggcgcatcatggaccacctcgacaagggcacgctcgacctg
tccgagctgaagtacctcgtgctcgacgaggccgacgagatgctcaagatgggcttcgcc
gaggacgtcgagacgatcctcgccgacaccccggacaccaagcaggtcgccctgttctcc
gcaacgatgccggcggccatccgccgcatgtcgaagcagtacctcaacgaccccgaggag
atcacggtcgcgtcgaagacgacgacctcctcgacgatcacccagcgctacctgatcgtg
tcgtatcagcagaagatcgatgcgctcacccgcatcctcgaggtcgagaacttcgaggcg
atgatcgtcttcgcccgcacgaagagcgcgaccgaggaggtcgccgagaagctgcgcgcc
cgcggctactctgccgccgccatcaacggcgacgtggctcaggtgcagcgcgagcgcacc
gtcaaccagctgaagtcgggcaagctcgacatcctcgtcgccacggatgtcgctgcccgc
ggcctcgacgtcgagcgcatctcgcacgtggtcaacttcgacatctcgaccgacaccgag
tcgtacgtgcaccgcatcggccgcaccgggcgtgccggccgcacgggtgacgcgatcagc
ttcgtcacgccgcgcgagcgcgggctcgtgaacgcgatcgagcgcgcgacgcgccagccg
ctcacgcagatgcagctgccgagcgtcgacgaggtcaacgtcacgcgcttgtcgcgcttc
gacgaccgcatcaccgctgcgctggaagacaccgaccgcatcgagcggttccgcgacatc
gtcgcccactacgtccgtcaccacgatgtgcccgaagtggacgtcgccgccgcgctcgcc
gtggtcgcgcagggcgagaccccgctgctgctcgagcccgaccccgagccgcgcgcacgc
gcgccgcgcgaggaccgtgccccgcgctcgttcgaccgcgacgaccgcgacgggcggccg
gaacgccgcccgcgtgcgagcaacccgaacatgacgacctaccgcatcgcggtgggcaag
cgccaccgcgtcgagccccgtcagatcgtcggggcgctcgcgaatgagggcggtctcagc
cgcggcgacttcggcgcgatccagatccgtcccgacttctcgctcgtcgagctgccgtcc
gacatgccccactcgacgctcgaccgcctggccgacacccgcatctcgggcaaggcgatc
gagatccgcgtcgacaccggcggcccgagccgcagctcgcgcggccgcttcgaccgcgac
gaccgaccgcgtgaccgcgaccgcgacggcgaccgcgacgaccggccggctcgcaagccc
cgccaccgctcggagacgcgcgactga
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