Microbacterium sp. BDGP8: P6897_11800
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Entry
P6897_11800 CDS
T11498
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
mibd Microbacterium sp. BDGP8
Pathway
mibd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mibd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
P6897_11800 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mibd03021
]
P6897_11800 (rho)
03019 Messenger RNA biogenesis [BR:
mibd03019
]
P6897_11800 (rho)
Transcription machinery [BR:
mibd03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
P6897_11800 (rho)
Messenger RNA biogenesis [BR:
mibd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
P6897_11800 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
AAA_25
NACHT
Spore_III_AA
AAA_22
PIP5K
Motif
Other DBs
NCBI-ProteinID:
WHE35372
LinkDB
All DBs
Position
complement(2432633..2434765)
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AA seq
710 aa
AA seq
DB search
MESNSENPTIDETVDAPAEEATEQQDAVVETPAEEAAPVEDAAPAEEAAPVEEAPVEQAP
AEVAAPAEVAEPAEAAEPAEKPAKAPRKRAPRRAKSTDAAPAAAADETPAAASEAAAEEL
SAATDAPATADAPAADAVAADAQPAADESASDATAEAVEAEPAEAPKKPARGRGRGRNAK
KEAEAEAEAAPAGDAATESADAPSAEGAVDAPAEQARDADASSDDSSKSDSGEGEGESTG
RSRSRSRSRNRNRNKDNAQGSQGQAGQNQGGNQNQGGNGQGGNNNAADDDDASGQNGRGR
QRNKRRGQGSGDEFETEINEDDVLIPIAGVLDVLDNYAFVRTTGYLPGTQDVYVSLGQVK
KYNLRKGDAVVGAIKQPREGEQSSRQKYNALVKVDSINGLSVEDAADRVEFGKLTPLYPQ
ERLRLETGPEKLTQRIIDLVAPIGKGQRGLIVAPPKAGKTIVLQQIAGAIAQNNPEVHLM
VVLVDERPEEVTDMQRTVKGEVIASTFDRPAEDHTTVAELAIERAKRLVELGRDVVVLLD
SITRLGRAYNLSAPTSGRVLTGGVDASALYPPKRFFGAARNIENGGSLTILATALVETGS
KMDEVIFEEFKGTGNSELRLSRQLADKRIFPAVDVNASSTRREEMLLSSDEVKITWKLRR
ALAGLDQQHALGVILDKLKETQSNVEFLVQMQKSIPAPTTHSGGHDNSIR
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
gtggagtccaactccgagaacccgacgatcgacgagaccgtcgacgccccagccgaagag
gcgaccgagcagcaggatgccgtcgtcgagacgcccgctgaggaggccgcccccgtcgag
gacgctgcccccgctgaggaggccgcccccgtcgaagaggcgcccgtcgagcaggcgccc
gccgaggtggccgcccccgccgaggtggccgagcccgctgaggcggctgagcccgccgag
aagccggcgaaggcgccgcgcaagcgagcaccccgtcgcgcgaagagcacggatgccgcg
cctgcggcggccgctgacgagaccccggccgccgcctccgaggcagcagcggaggagctc
tccgccgccaccgatgcgccggccaccgccgatgctcccgcagccgacgccgtcgccgcc
gacgcgcagccggccgcggatgagagcgcgtctgacgccacggccgaggccgtcgaggcg
gagcccgcggaggcgccgaagaagccggcgcgaggccgtggccgcggacgcaatgccaag
aaggaggccgaggccgaggctgaagccgcccccgcgggcgatgcggccaccgaatccgct
gacgctccgtctgcggagggtgccgtcgacgctcccgccgagcaggcgcgggacgccgac
gcctcctccgacgactcgtcgaagtccgactccggcgagggcgaaggcgagtcgaccggc
cgttcgcgcagccgttcgcgcagccgcaaccgcaaccgcaacaaggacaacgcgcagggc
agccagggccaggccggccagaaccagggcggcaaccagaaccagggtggcaacggccag
ggcggcaacaacaacgccgccgatgatgacgacgcctcgggacagaacggtcggggacgt
cagcgcaacaagcgccgcggccagggcagcggcgacgagttcgagaccgagatcaacgag
gacgacgtcctcatcccgatcgccggcgtgctcgacgttctcgacaactacgccttcgtg
cgcacgaccggctacctccccggtacgcaggatgtctacgtctcgctcggacaggtgaag
aagtacaacctgcgcaagggtgacgcggtcgtcggcgcgatcaagcagccgcgcgagggc
gagcagtcgagccgtcagaagtacaacgcgctggtcaaggtcgactcgatcaacggcctg
tccgtcgaggacgccgccgaccgggtcgagttcggcaagctgacgccgctgtacccgcag
gagcgtctgcgcctcgagaccggccccgagaagctgacgcagcgcatcatcgacctcgtc
gctcccatcggcaagggccagcgcggtctcatcgtcgcaccgcccaaggccggcaagacg
atcgtgctgcagcagatcgccggcgcgatcgcgcagaacaaccccgaggtccacctcatg
gtcgtgctggtcgacgagcggcccgaagaggtcaccgacatgcagcgcacggtgaagggc
gaggtcatcgcctcgaccttcgaccgtcccgccgaggaccacacgaccgtcgccgagctc
gcgatcgagcgcgccaagcgtctcgtcgagctcggccgcgacgtggtcgtgctgctcgac
tcgatcacgcgcctcggtcgcgcctacaacctgtcggccccgacgtcgggccgcgtcctg
accggtggtgtcgacgcttcggcgctgtacccgccgaagcgcttcttcggtgcagcgcgc
aacatcgagaacggcggctcgctcacgattctcgcgacggcgctggtggagaccggctcc
aagatggacgaggtcatcttcgaagagttcaagggcacgggcaacagcgagctgcgcctg
tcgcgtcagctggccgacaagcgcatcttccccgccgtcgacgtcaacgcctcctcgacg
cgacgtgaagagatgctgctctcctccgacgaggtcaagatcacgtggaagctgcgccgt
gccctcgcgggtctcgaccagcagcacgcgctgggcgtcatcctcgacaagctcaaggag
acgcagtccaacgtcgagttcctcgtgcagatgcagaagtcgatcccggcgccgaccacg
cactccggcgggcacgacaacagcatccgctga
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