Microbacterium sp. BDGP8: P6897_12935
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Entry
P6897_12935 CDS
T11498
Name
(GenBank) AlkA N-terminal domain-containing protein
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
mibd Microbacterium sp. BDGP8
Pathway
mibd03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
mibd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
P6897_12935
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
mibd03000
]
P6897_12935
03400 DNA repair and recombination proteins [BR:
mibd03400
]
P6897_12935
Enzymes [BR:
mibd01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
P6897_12935
Transcription factors [BR:
mibd03000
]
Prokaryotic type
Helix-turn-helix
AraC family
P6897_12935
DNA repair and recombination proteins [BR:
mibd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
P6897_12935
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AlkA_N
Ada_Zn_binding
HTH_18
HTH_AraC
HhH-GPD
Motif
Other DBs
NCBI-ProteinID:
WHE35586
LinkDB
All DBs
Position
complement(2671507..2673021)
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AA seq
504 aa
AA seq
DB search
MTSDGMTFDERYRAIDARDRRFDGQFVTAVRSTGIYCRPSCPARTPQPANVTFYPTSAAA
HEAGYRACKRCLPEATPGSPQWNLRGDLAARAMRLIADGVVDREGVPGLASRLGYSSRHL
TRLLTAELGAGPLALARAHRAHTARTLLVDTDLPIADVAFAAGFASVRQFNETVGEVFAM
PPGQLRARRQAGERMPGRIDLVLPVREPFDAAGLFGWMRAHAIPGVESGDERSFARVIRL
AGGPAWFEVRQDDAGRVRLRAELASLADLSTLIARVRRLFDLDADPTAIDEALARHPALA
PLVARIPGVRLPAAMDPDEMLIRAMIGQQISVASARTVQGRLTAELGEPVQTAAGPATLF
PTMAAIAERGAEVLRGPGARIRAIVGAATALADGSLRLSPGDDTHEQRAALLALPGIGPW
TADYVRMRVLGDPDILLPGDVAARAGAAAAGIPAGPSELVAWAERAAPWRSYLMAHLWYA
APVTQAWRESATEPTLPPSRKARA
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
atgaccagtgacgggatgaccttcgacgagcggtatcgcgccatcgacgcgcgcgaccgc
cgcttcgacggccagttcgtcacggcggtgcgctcgacgggcatctactgccgcccgagc
tgccccgcgcgcacacctcagcccgccaacgtgaccttctacccgacgagcgccgccgct
cacgaggccggataccgcgcatgcaaacgctgcctgcccgaggccacgcccgggtcgccg
cagtggaacctccgcggcgacctcgccgcgcgagcgatgcgtctcatcgccgacggggtc
gtcgatcgcgagggcgttccggggctcgcatcgcgcctcggctactcgtcgcgtcacctc
acccgactgctcaccgcggagctgggggccggacccctcgcgctggcccgcgcgcaccgt
gcccacaccgcgcgcaccctgctcgtcgacaccgatctccccatcgccgatgtcgccttc
gccgcggggttcgcgagcgtacgacagttcaacgagacggtcggtgaggtcttcgcgatg
cctcccggtcagctgcgcgcgcgccgccaggcgggggagcggatgccgggccgcatcgac
ctcgtcctcccggtgcgcgagccgttcgacgccgcgggcctcttcggatggatgcgggcc
cacgccatccccggggtcgagtcgggcgacgaacgctcgttcgcccgcgtgatccgtctt
gccgggggaccggcgtggttcgaggtgcgccaggatgacgcggggcgcgtgcgcctgcgc
gccgagctggcctcgctggccgacctgtccaccctcatcgcgcgggtccggcggctgttc
gacctcgacgccgatccgacggcgatcgacgaggccctcgcgcggcatcccgcactcgcg
cctctcgtggcgaggatcccgggcgtccgcctgcccgcggcgatggaccccgacgagatg
ctcatccgcgcgatgatcggccagcagatcagcgtcgcctccgcccgcaccgtgcagggg
cgcctgaccgccgagctcggcgagcccgtccagaccgccgccggccccgcgacactcttc
ccgacgatggcggcgatcgccgagcgcggcgctgaggtgctgcgcgggcccggggcgcgc
atccgggcgatcgtcggcgccgccaccgcgctcgccgacggctcgctgcggctgtctccc
ggtgacgacacgcacgagcagcgcgcggcgctcctcgccttgcccggcatcggcccctgg
accgccgactatgtgcggatgcgggtgctcggcgaccccgacatcctgctgcccggcgac
gtcgcggcacgcgcgggggcggccgccgccggtatccccgccggcccgtccgagctggtc
gcctgggccgaacgcgccgccccctggcgcagctacctcatggcccacctctggtacgcc
gcccccgtcacgcaggcgtggcgcgaaagcgcgaccgagccgaccctcccgccgtcccga
aaggcccgagcatga
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