Microbacterium sp. BDGP8: P6897_14300
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Entry
P6897_14300 CDS
T11498
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mibd Microbacterium sp. BDGP8
Pathway
mibd03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mibd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
P6897_14300
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mibd03021
]
P6897_14300
03400 DNA repair and recombination proteins [BR:
mibd03400
]
P6897_14300
Enzymes [BR:
mibd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
P6897_14300
Transcription machinery [BR:
mibd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
P6897_14300
DNA repair and recombination proteins [BR:
mibd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
P6897_14300
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
YlqD
DUF1690
TBCA_PH
Motif
Other DBs
NCBI-ProteinID:
WHE35844
LinkDB
All DBs
Position
complement(2966175..2970047)
Genome browser
AA seq
1290 aa
AA seq
DB search
MLESHTFDQLRIGLATADDIRRWSFGEVKKPETINYRTLKPEKDGLFGEQIFGPSRDWEC
ACGKYKRVRFKGIVCERCGVEVTKSSVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDM
APKDLEKVIYFAAYMVISVDEDARHRDLPTHENNLRLEIKNLGDRRDARVATRLAKLEEE
LATLEADGAKADQKKKAKDSAEKDMATVRKNFDEQISRLERVWEEFRSLEVGQLKQEDDV
FHELQDRFGQYFEAYMGAEGIQRRLAAFDLAAEADSLHLQISEGKGQRKIRAIKRLKVVN
SFLQTGMSPASMVLDVVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLRRLIDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGTGNRALKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIIVGPQLKLHQCGLPKQMALELFKPFVIKRLIDLGHSQNIKAAKRAVERTR
PEVWDVLEEIIRERPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCAAFNADFDGDQ
MAVHLPLSVEAQAEARILMLASNNILKPSDGRPVTLPSQDMIIGLHHLTTVIEGAKGEGR
VFGSVGEAILAKDEGTLDLQAKVRIRIPGLAFLEGDAPEGYERHGLVDASLGQAIFNDTL
PKGYPFVREQADKGKLSQIVNKLAEEYPKTEVAASLDRIKDAGFHWATRSGVTVALSDVL
TPPNKAEIISKYEKLASKVQGQFEKGLVTDAERRQEQIKIWTEATDEVQAAMKANFPAEN
TINRMVSSGARGNWLQIRNIAGIRGLVNNTKGEIMPRPIISSYREGLSVAEYFTATHGAR
KGLADTALRTADSGYLTRRLVDVSQDVIIREDDCGTSKGLELPIAAPGADGALIKDANVE
NSVFARTLAADAVSPSGEVLAAAGDDVGDVLINKLVEGGVTSIKVRSVLTCDSAVGVCAK
CYGRSLATGKIVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGSASADDITQGLPRVQELF
EARTPKGASPIAEASGRITIDETEKAKKVIITPDNGDEPFVYPVLKRATLLVEDGQHVEV
GDPLQVGTLDPKDIMRVQGAREVQKYLVGGVQGVYRSQGVPIHDKHIEVIVRQMLRKVTV
VDHADTTLLPGELVDFKKYQQINREAVAEGKRPASGRPELMGITKASLATESWLSAASFQ
ETTRVLTQAAMEGKSDPLVGLKENVIIGKLIPAGTGLAKYRNVAVEATEEAKSERYPNRI
FASDGAYSDADLSYVDFDSFSTDGDFTSYN
NT seq
3873 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgagtcacacaccttcgatcagcttcgcatcggcctggccactgctgacgacatc
cgtcgttggtccttcggcgaggtcaagaagcccgaaaccatcaactaccgcacgctcaag
cccgagaaggacggcctcttcggcgagcagatcttcggcccctcccgcgactgggagtgc
gcctgcggaaagtacaagcgcgtccgcttcaagggcatcgtctgcgagcgctgcggcgtc
gaggtcaccaagtcctcggtccgtcgtgagcgcatgggccacatcgagctcgccgctccc
gtgacccacatctggtacttcaagggcgtgccctcgcgcctcgggtacctgctcgacatg
gcgccgaaggacctcgagaaggtcatctacttcgccgcgtacatggtcatctcggtcgat
gaggatgcgcgtcaccgcgacctcccgacgcacgagaacaacctccgcctcgagatcaag
aacctcggtgaccgccgtgacgcccgcgtggcgacgcgtctggccaagctggaggaggag
ctcgcgaccctcgaggccgacggcgccaaggccgaccagaagaagaaggccaaggactcc
gccgagaaggacatggcgacggtccgcaagaacttcgacgagcagatctcgcgcctcgag
cgggtgtgggaggagttccgctccctcgaggtcggccagctcaagcaggaggacgacgtc
ttccacgagctgcaggaccgcttcggccagtacttcgaggcctacatgggcgccgagggc
atccagcgtcgcctcgcggcgttcgacctggccgccgaggccgactcgctgcacctgcag
atctccgagggcaagggccagcgcaagatccgtgcgatcaagcgcctcaaggtcgtcaac
tcgttcctgcagaccggcatgtcgccggcctcgatggtgctcgacgtcgtcccggtgatc
ccgccggagctgcgtccgatggtccagctcgacggtggccgcttcgcgacctccgacctc
aacgacctgtaccgccgcgtgatcaaccgcaacaaccgtctgcgtcgtctgatcgacctc
ggggctcccgagatcatcgtcaacaacgagaagcggatgctgcaggaggccgtcgacgcg
ctgttcgacaacggccgccgtggtcgccccgtcaccggtaccggcaaccgtgcgctgaag
tcgctgtcggacatgctcaagggcaagcagggacgtttccgtcagaacctgctcggaaag
cgcgtcgactactcgggtcgttcggtcatcatcgtcggaccccagctgaagctgcaccag
tgcggtctgcccaagcagatggccctcgagctcttcaagccgttcgtcatcaagcgcctg
atcgacctcggtcactcgcagaacatcaaggcggccaagcgtgccgtcgagcgcacgcgt
cccgaggtctgggacgtgctcgaggagatcatccgcgagcgtcccgtgctgctcaaccgt
gcacccaccctgcaccgcctgggcatccaggccttcgagccccagctcgtcgagggcaag
gcgatccagctgcacccgctcgtctgcgccgcgttcaacgcggacttcgacggtgaccag
atggccgtccacctgccgctctcggtcgaggcgcaggccgaggcccgcatcctgatgctc
gcgtcgaacaacatcctcaagccctcggacggccgtccggtcaccctgccctcgcaggac
atgatcatcggtctgcaccacctgaccacggtcatcgagggtgccaagggcgagggccgc
gtgttcggctcggtcggcgaggcgatcctggcgaaggacgagggcaccctcgacctgcag
gccaaggtccgcatccgcatcccgggtctcgcgttcctcgagggcgacgcccccgagggc
tacgagcgccacggtctggtcgacgcgtcgctcggacaggcgatcttcaacgacaccctg
cccaagggctacccgttcgtccgcgagcaggccgacaagggcaagctgtcgcagatcgtc
aacaagctggccgaggagtaccccaagaccgaggtcgcggcatccctcgaccggatcaag
gacgccggcttccactgggcgacccgctcgggcgtcacggtggcgctcagcgacgtcctg
acgccgccgaacaaggccgagatcatctcgaagtacgagaagctcgcctcgaaggtccag
ggccagttcgagaagggtctcgtgaccgacgccgagcgtcgtcaggagcagatcaagatc
tggaccgaggcgaccgacgaggtccaggccgccatgaaggcgaacttccccgccgagaac
accatcaaccgcatggtctcgtcgggcgcccgtggtaactggctgcagatccgtaacatc
gccggtatccgaggcctggtcaacaacaccaagggtgagatcatgccgcgtccgatcatc
tcctcgtaccgcgaggggctgtcggtggcggagtacttcaccgcgacgcacggtgcccgt
aagggtctggccgacaccgctctgcgtaccgccgactcgggttacctgacccgtcgtctg
gtggacgtctcgcaggacgtcatcatccgcgaggacgactgcggcacgtcgaagggcctc
gagctcccgatcgccgcacccggtgccgacggcgccctcatcaaggacgccaacgtcgag
aactcggtgttcgcccgtaccctcgccgcagacgccgtctcgccctcgggcgaggtgctg
gccgcggccggtgacgacgtgggcgacgtgctgatcaacaagctcgtcgagggcggggtg
acctccatcaaggtgcgctcggtcctgacctgcgactcggccgtgggtgtctgcgcgaag
tgctacggccgttcgctggccaccggcaagatcgtcgacatcggcgaggcggtcggcatc
atcgccgcccagtcgatcggtgagcccggtacccagctgacgatgcgtaccttccacacc
ggtggttcggcctcggccgacgacatcacgcagggtctgccccgcgtgcaggagctcttc
gaggcccgtacccccaagggtgcgtcgccgatcgcggaggccagcggccgcatcacgatc
gacgagaccgagaaggccaagaaggtcatcatcacgcccgacaacggcgacgagcccttc
gtctacccggtgctgaagcgtgcgacgctcctcgtcgaggacgggcagcacgtcgaggtc
ggcgacccgctgcaggtgggcacgctcgacccgaaggacatcatgcgcgtgcagggtgcc
cgcgaggtgcagaagtacctcgtcggcggcgtgcagggcgtctaccgctcgcagggtgtg
ccgatccacgacaagcacatcgaggtcatcgtccgtcagatgctgcggaaggtcaccgtg
gtcgaccacgccgacacgacgctgctcccgggtgagctggtggacttcaagaagtaccag
cagatcaaccgcgaggccgtggccgagggcaagcgtcccgcgtcgggccgccccgagctg
atgggtatcacgaaggcgtcgctcgcgaccgaatcgtggctgtcggccgcgtcgttccag
gagaccacccgcgtcctcacgcaggcggccatggagggcaagagcgacccgctcgtcggc
ctcaaggagaacgtcatcatcggaaagctcatccccgccggaacgggccttgcgaagtac
cgcaatgtggccgtcgaggcgacggaggaggcgaagagcgagcggtaccccaaccgcatc
ttcgcgtcggacggtgcgtacagcgacgccgacctgagctacgtcgacttcgacagcttc
tccaccgacggcgacttcaccagctacaactga
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