Allocoleopsis franciscana: Mic7113_3809
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Entry
Mic7113_3809 CDS
T02374
Name
(GenBank) VacB/RNase II-like 3'-5' exoribonuclease
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
mic
Allocoleopsis franciscana
Pathway
mic03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mic00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Mic7113_3809
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mic03019
]
Mic7113_3809
03016 Transfer RNA biogenesis [BR:
mic03016
]
Mic7113_3809
Enzymes [BR:
mic01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Mic7113_3809
Messenger RNA biogenesis [BR:
mic03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Mic7113_3809
Transfer RNA biogenesis [BR:
mic03016
]
Prokaryotic type
tRNA degradation factors
Mic7113_3809
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
S1
OB_HELZ2
RNase_II_C_S1
OB_cyt-4
OB_Dis3
Motif
Other DBs
NCBI-ProteinID:
AFZ19526
UniProt:
K9WI93
LinkDB
All DBs
Position
complement(4419470..4421719)
Genome browser
AA seq
749 aa
AA seq
DB search
MEFSIATLLSNFTDEKSVAPKNLEKKLGCQDEENLEKLQIALDALEKIGVLVKERGRYRR
IYEEDVVEAKLRCSSKGFCFAIQDVEGADDIYIQKSHLSTAWNGDRVLVKITKEGSRRRS
PEGQVKLILERANPSVLARVRRTNSSFQAVPLDDRLLFELDLKPNHENLEEAIDHLVHVE
VLRYPLGHNNPIGKVARVLGSDAEDAADTDIVCCKHDLRRNFPPNALKAAEEIPKQLRKA
DLKKRLDLRERLTLAIEGEQPSDSGVVENAFTLEKTKTGYWELGVHIADVASFIPMDSPL
DREARKRCTAVYLGDLVLPLLPETVQERCSLVPGEDRLAISVMLTLNEEGELVEFEIHPS
VIRVDHQLSYAQAQSLLGEHQEADPELASGLEMLKHVFFELSPAVRTQRQQRGAFDLNVS
ETQYPFKDEGRMGAIILSSTLPVRSLLMELTILANQAVASHLQALALPAIYCVQPIPDLD
ELQDLIKLGNNLHLDMQMDEEEDVTSQDYQRFTQLFAKSTAPKVLNYLLQSTLKLAGYSS
KPGVHFGLALDKGYTHCVSPLRRYGDLFVQRVLLELFEKGRDRRSTRSKDRVNLNHSSSH
GNVNWNILPPDIQQELETEVTILVPHLNDREKLAQDAEVDLQGLKKAEQMKERTGDVFSG
LITGVQSYGFFVEIEDLLVEGLVHVSSLKDDWYEYRSRHACLVGRKNRTAYRLGDRVEVQ
VKSVDYYRQQIDLVTVGGGSVAFNEDLEE
NT seq
2250 nt
NT seq
+upstream
nt +downstream
nt
atggaattttcaatcgctacattactttccaatttcaccgatgaaaaatcagtggctccc
aagaatttggaaaaaaagctgggttgccaggacgaagaaaatctggaaaaactccaaatt
gctctggatgctctagaaaaaataggagttttggtcaaagaacgtggcaggtatcgacgc
atctatgaagaagatgtggttgaagccaagctgcgctgttcgagtaagggattttgcttc
gcgattcaagatgtagagggcgcggatgatatttatatccaaaaaagccatttgagtacc
gcctggaatggcgatcgcgttctggtcaaaatcaccaaagaaggtagccgccgtcgtagt
cccgaagggcaggtaaagttaatcttagaacgagccaatccttcggtcctggcaagagtc
cggcgcaccaatagcagctttcaagcggttcccctagatgaccgactgttgtttgaactc
gacctcaagcctaatcacgaaaatctagaagaagcgatcgatcatctggttcatgtcgaa
gtgttacgctaccccctaggacacaataacccaattggtaaggtagcacgcgtcctagga
agtgacgccgaagacgcggctgacacggatatcgtgtgttgtaagcacgatttgcgccgc
aactttccccccaacgcgctgaaagccgctgaggagatacccaaacaactccgcaaggca
gacttaaaaaagcgtctggatttacgggagcgtctgacgttggcgattgagggagagcaa
cccagcgacagtggtgtggttgagaatgccttcaccttggaaaaaacgaagacgggatac
tgggagttgggtgtccatatcgcagatgtcgccagctttattcccatggactccccattg
gatcgagaagccagaaagcgctgtacagcggtttatttgggagatctggtgctgccccta
ctcccagagaccgtgcaagaacgttgctccttagtgcccggtgaagaccgtttggctatt
tcggttatgctcaccctgaacgaagagggtgaattggtggagtttgaaattcacccttct
gtgattcgggtagaccatcagctaagttatgctcaagcacagtcgctgttaggagaacat
caagaagctgaccccgaattggcttcgggattagaaatgctcaagcacgtgttttttgaa
ctcagtccggcggttcgcacgcaacggcaacaacggggtgcttttgacttaaatgtatcg
gaaacgcagtatccctttaaagatgaagggcgcatgggagcgattatcctttcttccacg
ctgccggtacgctctttgttaatggaattaacgattttagccaaccaagcggttgcctcc
catttgcaagcgcttgccctacctgccatttactgtgtgcaaccgataccggatctcgat
gagcttcaggatttgattaagttgggcaacaatctccacctcgatatgcagatggatgag
gaggaggatgtgacttcccaggactatcaacgctttacccagttatttgccaaatcaacc
gctccaaaagtcctgaattatttattgcaatccacgttaaagctagctggctacagttct
aagcccggtgttcactttggtttagcgttggataaaggctatactcactgcgtctctccc
ctgcggcgttatggggatttgttcgtgcaacgggtgctgctggaattatttgagaaagga
cgcgatcgccgctccactcgttctaaagaccgtgtcaatcttaaccatagtagcagccac
ggcaatgtgaactggaatattttgccgcccgatatccagcaagagttagaaacagaggtc
acgatcttagtgcctcatctcaatgatcgggagaaactcgcccaggatgcggaagtggat
ttgcagggtttaaagaaagccgaacagatgaaagaacgcacaggagatgtgttcagtggg
ctgattacgggcgtccagtcctacggcttttttgtggaaattgaagaccttttggtcgaa
ggactcgttcacgttagttccctcaaagatgactggtacgagtatcgctctcgacacgcc
tgcctcgtgggccgaaaaaaccgcaccgcctatcgattgggcgatcgcgtggaagtccaa
gtcaagagcgttgattactaccgtcagcaaattgacctcgtcacggttgggggtggtagc
gttgcgtttaacgaagacttagaggagtaa
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