Microbacter sp. GSS18: P0L94_02140
Help
Entry
P0L94_02140 CDS
T08893
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
mica
Microbacter sp. GSS18
Brite
KEGG Orthology (KO) [BR:
mica00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mica03019
]
P0L94_02140 (hrpA)
Enzymes [BR:
mica01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
P0L94_02140 (hrpA)
Messenger RNA biogenesis [BR:
mica03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
P0L94_02140 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
AAA_22
T2SSE
nSTAND3
ResIII
AAA_30
NACHT
SLFN-g3_helicase
TsaE
SRP54
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
WES64882
LinkDB
All DBs
Position
complement(458219..462205)
Genome browser
AA seq
1328 aa
AA seq
DB search
MSAPTPVLAYPPELPVSAARDEIARAIADHQVVIVAGATGSGKTTQLPKICLELGRTRIA
HTQPRRIAARSIAERVAEELQVPLGSTVGYRVRFTDKVSEDTAIALMTDGILLNEIHRDR
LLRRYDTIIVDEAHERSLNVDFLLGYLRRILPKRPDLKVIITSATIDPESFARHFALPTR
RGGEPEPAPIIEVSGRTYPVEIRYRPPAGTEGAADARSDGSGDDVDALLAALRELDREPA
GDVLVFLPGEAEIRDAMDAVRGMYAKDAAPTEVLPLYGRLSAAEQHRVFERSRVAGVRRR
VILATNVAETSLTVPGIRYVVDAGTARISRWSARSKIQRLPIEAISQASAQQRSGRAGRT
APGIAIRLYAEDDFTARDEFTEPEILRTSLASVILQMLALGFGDISAFPFLTPPDSRGVR
AAFDLLLELGAVSDARTGGRGERRETTDDRRGPRLTAIGRDIARLPIDPRFARMLIEAQR
SGVLREMLAIVAGLSIQDVRERPEERREEADRLHARFTDPTSDFLSLLNLWNHLQEKQAE
LGSSAFRRMCRSEHLNYVRVREWSDVHRQLSTLMRTSKDTRTRSASVDAADPDAVHRAIL
SGLLSHIGILDERTTSSRGDNRSPRRDDRRGAEYLGARGTRFAIFPGSGLKKKRPQAVMA
AELVETSRLFARTVAAIDPEWAESLAGDLVKRSMSEPHWSKSAGAASAYEKLTLFGVDIV
PRRRVQLARFDRPLARELFLRHALVEGEWESAHLDKRLTAFERRNLELRRRLEKVEERER
RRDILVGDEAVYAFYDARIPREVFDVRSFETWWRDTIGRTPRLLDMTEADLVDEASRGDE
RDFPARWQQGDQVLSLAYRFEPGAADDGVTAVVPLPLLAQLRPDGFDWQVPGMRAELIAA
LIRSLPKAIRRTVVPAADWAARFSDELHGAGPESHDGLPPVALTDALAARIQRVANQPVT
AADFDLDRVPGHLRLSFRAVDARGRAVGSDRDLAALQARLADRARQSVASSIERAATRPS
GPRAPSPRDPASAGTPAGDGFAERSGLTAWSFGDLPEVVDTKVAGGVVRGYPALVDEGAS
IALRLESTPEAAAAATGGGVRRLMLLAVPSPAPYVLEHLTSAEKLALAASPYPSAKALIE
DCRVAVADAVRDRTAPGDIRSAQEFAAVRDAFSQAVVDELFQTVSLTARILTLAREVERA
MRDANSLTLLGALGDVKAQLSGLVFPGFASRTGPAQLAHLPRYLQAAADRVRALPDNPGR
DRQRMSEFERAAAAYADAGGTIPPAADAPAALVRTRWLLEEYRVSLFAQQRGTAEPVSLQ
RIQKSLRE
NT seq
3987 nt
NT seq
+upstream
nt +downstream
nt
gtgtctgcgcccactcccgtcctcgcctacccgcccgagctgcccgtcagcgccgcgcgg
gacgagatcgcgcgcgccatcgcggaccatcaggtcgtcatcgtcgccggggccaccggc
tcgggcaagaccacgcagctgccgaagatctgcctcgaactcggccgcacgaggatcgcg
cacacgcagccgcgacgcatcgccgcgcgcagcatcgccgagcgcgtcgcggaagagctg
caggtgcccctcggctccaccgtcggctacagggtgcgcttcaccgacaaggtgtcggag
gacaccgccatcgcgctcatgaccgacggcatcctcctcaacgagatccaccgcgaccgg
ctgctgcgtcgctacgacacgatcatcgtcgacgaggcccacgagcgatcgctgaacgtg
gacttcctgctcggctacctccgccggatcctgcccaagcggccggatctgaaggtgatc
atcaccagcgccacgatcgaccccgagagcttcgcccggcacttcgcgctgccgacgcgg
cgcggcggcgaacccgagcccgcgccgatcatcgaggtgtccggacgcacctacccggtc
gagatccgctaccggccgcccgccggcaccgagggcgcggcggatgcccggtccgacgga
tcgggggacgacgtcgacgcgctgctggcggcgctgcgggagctcgatcgcgagcccgcg
ggggatgtgctggtgttcctcccgggcgaagccgagatccgggatgcgatggatgccgtc
cgcggcatgtacgccaaggacgccgcacccacagaggtgctgccgctgtacggccggctg
tcggccgccgagcagcaccgcgtgttcgagcgctcccgcgtcgccggcgtgcgccggcgc
gtgatcctggcgacgaacgtcgccgagacgagcctgacggtgcccggcatccgctacgtc
gtcgacgccggcaccgcgcgcatctcgcgatggtcggcgcgcagcaagatccagcggctg
ccgatcgaggccatctcgcaggcatcggcccagcagcggtccggtcgcgccggccgcacg
gccccggggatcgcgatccggctgtatgccgaagacgacttcaccgcgcgcgacgaattc
accgagcccgagatcctgcggacctcgctcgcctcggtgatcctgcagatgctcgccctc
ggcttcggcgacatctcggccttccccttcctcactcccccggactcgcgcggcgtgcgg
gcggcgttcgacctgctcctcgagctcggcgcggtctcggatgcccgcacgggcggccgc
ggcgagcgccgcgagacgacggacgaccgccgcgggccccgtctcacggccatcggccgc
gacatcgcgcgcctgccgatcgacccccgcttcgcgcgcatgctcatcgaggcgcagcgc
agcggggtcctgcgcgagatgctggcgatcgtggcgggactgtcgatccaggacgtccgc
gagcgccccgaggagcgccgcgaggaggcggaccggctccacgcgcgcttcacggacccc
accagcgacttcctgagcctgctgaacctgtggaaccacctgcaggagaagcaggccgag
ctcggctccagcgccttccgccgcatgtgccgctccgagcacctcaactacgtgcgcgtg
cgggagtggtccgacgtccatcggcagctgagcacgctcatgcgcacgtcgaaggacacc
cgcacccgcagcgcctccgtcgacgcggccgatccggatgccgtgcaccgggcgatcctg
tcggggctgctgtcgcacatcggcatcctggacgagcgcacgacgtcgtcgcgcggggac
aaccggtcgccgcggcgcgacgaccgccgcggcgcggagtacctcggcgcgcggggcacg
cgcttcgcgatcttcccgggctcgggcctgaagaagaagcgcccgcaggccgtcatggcc
gccgagctggtggagaccagccgcctgttcgcccgaacggtcgcggccatcgaccccgag
tgggcggagtcgctggccggcgatctggtcaagcgcagcatgagcgagccgcactggtcg
aagtcggcgggggcggcatccgcctacgagaagctcacgctgttcggcgtcgacatcgtc
ccccgccggcgcgtgcagctggcgcgcttcgaccggccgctcgcgcgcgagctgttcctg
cgccacgcgctggtcgagggcgagtgggagtcggcccacctcgacaagcggctcacggcg
ttcgagcggcgcaatctggagctgcgccgccgcctcgagaaggtcgaggagcgggagcgg
cgccgtgacatcctcgtcggcgacgaagcggtgtacgccttctacgacgcccgcatcccg
cgcgaggtgttcgacgtccgctcgttcgagacgtggtggcgcgacacgatcgggcgcacg
ccgcgtctgctcgacatgaccgaggcggacctcgtcgacgaggcgtcgcgcggcgatgag
cgggacttcccggcgcgctggcagcagggcgaccaggtgctgtccctcgcgtaccggttc
gagccgggagccgccgacgacggcgtcaccgcggtcgtgccgctgccgctgctggcccag
ctgcggcccgacggcttcgactggcaggtgcccggcatgcgcgccgagctcatcgccgcc
ctcatccggtcgctgcccaaggcgatccggcgcacggtcgtgcccgccgcggactgggcc
gcgcgcttctcggacgaactgcacggcgcgggccccgagtcccacgacgggctcccaccg
gtggccctgaccgacgccctggctgcgcgcatccagcgggtcgccaaccagcccgtgacg
gccgccgacttcgacctcgaccgcgtgccgggccacttgcggctgtcgttccgcgccgtc
gacgcgcgcggtcgcgccgtcggctcggaccgcgacctcgcggccctgcaggcgcggctg
gccgaccgcgcccgccagtcggtcgcgagctccatcgagcgcgccgcgacccgcccgtcc
gggccccgcgcgccctcgccccgcgatcccgcctcggcgggcacgcccgccggagacggc
ttcgccgagcggtcggggctcaccgcgtggtccttcggcgacctgcccgaggtggtcgac
acgaaggtcgccggcggtgtcgtgcggggctaccccgccctcgtcgacgagggcgcgtcg
atcgcgctgcgcctggagtccacgcccgaggccgccgccgcggccacgggcggcggcgtg
cgccggctcatgctgctcgccgtgccctcgccggcgccctacgtcctcgagcacctcacc
agcgcggagaagctcgcgctcgcggcgtcgccgtacccgtcggcgaaggcgctcatcgag
gactgccgtgtcgccgtcgccgatgccgtgcgcgaccggacggcacccggcgacatccgc
tcggcgcaggagttcgccgcggtccgcgacgccttctcgcaggcggtcgtcgacgagctg
ttccagaccgtgtcgctgaccgcgcgcatcctcacgctcgcccgcgaggtcgagcgtgcc
atgcgcgacgcgaattcgctgaccctgctcggcgccctcggcgacgtcaaggcgcagctg
tcgggtctcgtcttcccgggattcgcctcgcgcaccggcccggcgcagctggcccacctg
ccccgctacctgcaggcggccgccgaccgcgtgcgggcgctgccggacaatccggggcgc
gaccgccagcgcatgagcgagttcgagcgggcggccgccgcgtacgcggacgccggcggc
acgatcccgcccgccgccgacgcgccggcggcactcgtgcgaacgcgctggctgctcgag
gagtatcgcgtgagcctgttcgcacagcagcgcggcaccgccgagccggtctcgctgcag
cgcatccagaagtcgctgcgggaatag
DBGET
integrated database retrieval system
