Microbacter sp. GSS18: P0L94_08740
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Entry
P0L94_08740 CDS
T08893
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mica
Microbacter sp. GSS18
Pathway
mica03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mica00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
P0L94_08740
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mica03019
]
P0L94_08740
03009 Ribosome biogenesis [BR:
mica03009
]
P0L94_08740
Enzymes [BR:
mica01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
P0L94_08740
Messenger RNA biogenesis [BR:
mica03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
P0L94_08740
Ribosome biogenesis [BR:
mica03009
]
Prokaryotic type
rRNA helicases
P0L94_08740
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Transketolase_C
UvrA_inter
Cas3-like_C_2
Maf_flag10_N
Flavi_DEAD
adh_short
Motif
Other DBs
NCBI-ProteinID:
WES66150
LinkDB
All DBs
Position
1850335..1852143
Genome browser
AA seq
602 aa
AA seq
DB search
MTETDAPIEAEAPAEPAEKTFADLGLSEPVLKALRGIGYETPSAIQAATIPTLLEGRDVV
GMAQTGTGKTAAFALPIVDRLDVSQKNPQALVLAPTRELALQVCEAFEKYAGHLKGVHVL
PVYGGQGYGVQLSALRRGVHIVVGTPGRIIDHLEKGTLDLSELQYLVLDEADEMLKMGFA
EDVETILAETPDTKQVALFSATMPATIRRMSKQYLNEPEEITVKTKTTTSASITQRYLIT
AWQQKMDALTRILEVENFDGMIVFGRTRSVTEEIAEKLRARGYSAAAINGDIVQAQREKT
VNQLKSGKLDILVATDVAARGLDVERISHVVNYDIPTDTESYVHRIGRTGRAGRSGDAIS
FVTPKERWLVRAIEKATRQELTEMNLPSVDEVNETRLSRFDDRISAALTESERVDRFRDI
VAHYVSHHDVPEVDVAAALAIVAQGETPLLLEPDPEPAERPRRQRDHDDRGDRGDRGPRE
PRREREPKAGYATYRIAVGKRHRVEPRQIVGALANEGGLRRDDFGRIQIRPEFSLVELPA
DLPRDTLDRLTDTRISGRLIEMRLDTGGPSGRSRGYADKGDRRERGDRYDRGERPPRRRD
DR
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
gtgactgaaaccgacgccccgatcgaggccgaggctcccgccgagcccgccgagaagaca
ttcgcagacctcggcctgagcgagcccgtgctcaaggccctccgcgggatcgggtacgag
acgccgtcagccatccaggccgcgacgatcccgacgcttctcgaggggcgcgatgtcgtg
ggcatggcgcagacgggcaccggcaagacggccgcgttcgcgcttccgatcgtcgaccgc
ctcgacgtgtcgcagaagaacccgcaggcgctggtgctcgccccgacgcgcgagctcgcg
ctgcaggtgtgcgaggcgttcgagaagtacgccgggcacctcaagggcgtgcacgtcctc
ccggtctacggcggacagggctacggcgtccagctgtcggccctgcggcgcggcgttcac
atcgtcgtcggcacgccgggccgcatcatcgatcatctcgagaagggcacgctcgacctc
tccgaactgcagtacctcgtgctggacgaggccgacgagatgctcaagatgggcttcgcc
gaggacgtcgagacgatcctcgccgagacccccgacaccaagcaggtggccctgttctcg
gcgaccatgccggccacgatccggcgcatgtcgaagcagtacctgaacgagcccgaagag
atcaccgtcaagacgaagacgacgacatcggcgagcatcacgcagcggtacctcatcacg
gcctggcagcagaagatggacgcgctcacccgcatcctcgaggtcgagaacttcgacggc
atgatcgtgttcggacgaacccgcagcgtcaccgaggagatcgccgagaagctgcgcgcc
cgcggctattccgccgccgccatcaacggcgacatcgtgcaggcccagcgcgagaagacc
gtgaaccagctgaagtccggcaagctcgacatcctggtcgccacggacgtcgccgcgcgg
ggcctggatgtcgagcgcatctcgcacgtggtcaactacgacatcccgaccgacaccgag
tcctacgtccaccgcatcggccgcacgggccgcgccggccgctcgggcgacgccatcagc
ttcgtcacgccgaaggagcgctggctcgtgcgcgcgatcgagaaggcgacgcggcaggag
ctcaccgagatgaacctgccgagcgtcgacgaggtgaacgagacccgcctgtcgcgcttc
gacgaccgcatcagcgccgcgctgaccgagtccgagcgcgtcgaccggttccgcgacatc
gtcgcccactacgtgagccaccacgacgtgcccgaggtcgatgtcgcggccgcactcgcg
atcgtcgcccagggcgagacgccgctgctgctcgagcccgaccccgagccggccgagcgc
ccgcgtcggcagcgcgaccacgacgaccggggcgaccgcggcgaccgcggcccgcgcgag
ccgcggcgcgagcgcgagccgaaggcgggttacgcgacgtaccggatcgccgtgggcaag
cgccatcgcgtcgagccgcgccagatcgtgggcgcactcgcgaacgaaggcggcctgcgc
cgcgacgacttcggccgcatccagatccggccggagttctcgttggtcgagctgcccgcg
gacctgccgcgcgacactctggaccgtctgaccgacacgcggatctccgggcgcctcatc
gagatgcggctggataccggcggcccctcggggcggtcccgcggatacgcggacaaggga
gaccgtcgcgagcgcggcgaccggtacgaccgcggcgagcgaccgccgcgccgtcgggac
gaccgctga
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