Microbacter sp. GSS18: P0L94_10765
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Entry
P0L94_10765 CDS
T08893
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mica
Microbacter sp. GSS18
Pathway
mica03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mica00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
P0L94_10765 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mica03021
]
P0L94_10765 (rpoC)
03400 DNA repair and recombination proteins [BR:
mica03400
]
P0L94_10765 (rpoC)
Enzymes [BR:
mica01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
P0L94_10765 (rpoC)
Transcription machinery [BR:
mica03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
P0L94_10765 (rpoC)
DNA repair and recombination proteins [BR:
mica03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
P0L94_10765 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
WES62934
LinkDB
All DBs
Position
complement(2321129..2325001)
Genome browser
AA seq
1290 aa
AA seq
DB search
MLDATTFDELRIGLATADDIRRWSYGEVKKPETINYRTLKPEKDGLFGEQIFGPSRDWEC
ACGKYKRVRFKGIVCERCGVEVTKSSVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDM
APKDLEKVIYFAAYMVISVDEDARHRDLATHENNIRLEIKNIGDRRDSRIATRLAKLEEE
LAALEEEGAKADQKKKVKDAAEKEMASIRKNADDSLAKLERVWEEFRTLEVGSLKGEDEI
FHELQDRFGQYFEAHMGAESIKRRLETFDLAAEAESLHLQIAEGKGQRKIRAIKRLKVVN
SFLQTGMSPASMVLEVVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLRRLIDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGTGNRALKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIIVGPQLQLHQCGLPKQMALELFKPFVIKRLIDLGHSQNIKAAKRAVERYR
PEVWDVLEEIIRERPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCAAFNADFDGDQ
MAVHLPLSVEAQAEARILMLASNNILKPSDGRPVTLPSQDMIIGLHHLTTVKEGALGEGR
VFGSVSEAILAKDEGTLDLQAKVRIRVPGLTFLEGEAPEGYERHGLLDASLGQAIFNDTL
PKGYPFVREQADKGKLSQIVNKLAEEYPKVEVAASLDRIKDAGFYWATRSGVTVALSDIL
TPPEKKDIVARHEQAAAKAQAQFEKGLTTDAERRQELIKIWTEATDEVQKAMRDNFPEDN
TINRMVSSGARGNWLQIRNIAGMRGLVNNPKGEIIPRPIISSYREGLSVAEYFIATHGAR
KGLADTALRTADSGYLTRRLVDVSQDVIIRENDCGTSKGLDFIIAREGADGVLRRDENVE
NSVFARTLAADVVNAAGEVVLAAGEDVGDPEINQLVEAGIESIKVRSVLTCDSAVGVCAQ
CYGRSLATGSLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGSASADDITQGLPRVQELF
EARTPKGASPIAEADGRITIEETDKSRKVILTPDNGDEPHVYPVLKRATLLVEDGQRVTV
GQALQVGTLDPKEVMRVQGAREVQKYLVNGVQGVYRSQGVPIHDKHIEVIVRQMLRKVTV
VDHGDTALLPGEMVDLKRYQAINREAVAGGKRPASGRPELMGITKASLATESWLSAASFQ
ETTRVLTQAAMEGKSDPLVGLKENVIIGKLIPAGTGLAKYRNVTVEATEEAKSERYPNRI
FASDGAYSDADLSYVDFDSFTTDDFSGNYN
NT seq
3873 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgcaacaaccttcgatgagcttcgcatcggcctggccaccgccgacgacatc
cgccgttggtcctacggtgaggtcaagaagcccgagaccatcaactaccgcacgctcaag
cccgagaaggacggcctcttcggcgagcagatcttcgggcccagccgcgactgggagtgc
gcgtgcggcaagtacaagcgcgtccgcttcaagggcatcgtctgcgagcgctgcggcgtg
gaggtcaccaagagctccgtccgccgcgagcggatgggccacatcgagctggccgccccc
gtcacccacatctggtacttcaagggcgtgccctcgcgcctcgggtacctgctggacatg
gcgcccaaggacctcgagaaggtcatctacttcgccgcgtacatggtgatctcggtcgac
gaggatgcgcgccaccgcgacctcgcgacccacgagaacaacatccgcctcgagatcaag
aacatcggcgaccgccgtgactcccgcatcgccacccgcctggcgaagctggaggaggag
ctcgccgctctcgaggaggaaggcgccaaggccgaccagaagaagaaggtcaaggacgcc
gccgagaaggagatggcctcgatccgcaagaacgcggacgacagcctcgccaagctcgag
cgcgtgtgggaggagttccgcacgctcgaggtcggctcgctcaagggcgaggacgagatc
ttccacgagctccaggaccgcttcggtcagtacttcgaggcccacatgggcgcggagtcg
atcaagcgccgcctcgagaccttcgacctggccgccgaggcggagagcctgcacctgcag
atcgccgagggcaagggccagcgcaagatccgcgcgatcaagcgcctcaaggtcgtcaac
tcgttcctgcagaccggcatgagcccggcgtcgatggtgctcgaggtcgtcccggtgatc
ccgccggagctgcgcccgatggtccagctggacggcggccgcttcgcgacctccgacctc
aacgacctgtaccgtcgcgtgatcaaccgcaacaaccgcctccgtcgcctgatcgacctc
ggtgcccccgagatcatcgtcaacaacgagaagcggatgctgcaggaagccgtcgacgcg
ctgttcgacaacggccgccgcggtcgtcccgtcaccggcaccggcaaccgcgccctgaag
tcgctgagcgacatgctcaagggcaagcagggacgcttccgtcagaacctgctcggcaag
cgtgtggactactcgggccgttcggtcatcatcgtgggtccccagctccagctgcaccag
tgcggtctgcccaagcagatggctctcgagctgttcaagccgttcgtcatcaagcgcctc
atcgacctcggccactcgcagaacatcaaggccgccaagcgtgccgtcgagcgctaccgt
cccgaggtctgggacgtgctcgaggagatcatccgcgagcgtccggttctgctgaaccgt
gcgcccacgctccaccgcctcggcatccaggccttcgagccgcagctggtcgagggcaag
gccatccagctccacccgctcgtgtgcgcggcgttcaacgccgacttcgacggtgaccag
atggccgtgcacctgccgctgtcggtcgaggcccaggccgaggcccgcatcctgatgctg
gcgtcgaacaacatcctgaagccgtcggacggccgcccggtgaccctgccctcgcaggac
atgatcatcggcctccaccacctgaccacggtcaaggagggcgccctcggcgagggccgc
gtgttcggctcggtgtccgaggcgatcctggcgaaggacgagggcaccctcgacctgcag
gccaaggtccgcatccgcgtccccggtctgacgttcctcgagggcgaagcgcccgagggc
tacgagcgtcacggcctcctggatgcctcgctcggccaggcgatcttcaacgacaccctg
cccaaggggtacccgttcgtgcgcgagcaggccgacaagggcaagctgtcgcagatcgtc
aacaagctggccgaggagtaccccaaggtcgaggtcgcagcttcgctggaccgcatcaag
gacgccggcttctactgggccacgcgttcgggtgtgaccgtcgcgctgagcgacatcctc
acgccgccggagaagaaggacatcgtcgcccgccacgagcaggccgcggccaaggctcag
gcgcagttcgagaagggtctcacgaccgacgccgagcgtcgtcaggagctcatcaagatc
tggaccgaggcgaccgacgaggtccagaaggcgatgcgcgacaacttcccggaggacaac
accatcaaccgcatggtgtcgtcgggtgctcgtggtaactggctgcagatccgcaacatc
gcgggtatgcgaggcctggtgaacaacccgaagggtgagatcatcccgcgtccgatcatc
tcgtcgtaccgcgagggtttgtcggtggcggagtacttcatcgcgacccacggtgcgcga
aagggtctggccgacaccgccctccgcaccgcggactcgggctacctcacgcggcgcctc
gtcgacgtctcgcaggatgtcatcatccgcgagaacgactgcggcacctcgaagggtctg
gacttcatcatcgcccgcgagggcgctgacggcgtcctccgccgcgacgagaacgtcgag
aactcggtgttcgcgcgcacgctcgcagccgacgtggtcaacgcggccggcgaggtcgtg
ctcgcggcgggcgaggacgtcggcgaccccgagatcaaccagctggtcgaggccggcatc
gagtcgatcaaggtgcgctcggtcctcacgtgcgactcggccgtcggcgtctgcgcgcag
tgctacggccgctcgctcgcgaccggttcgctcgtcgacatcggcgaggcggtcggcatc
atcgccgcccagtcgatcggtgagcccggcacgcagctgacgatgcgcacgttccacacc
ggtggttcggcgtcggccgatgacatcacgcagggtcttccccgcgtgcaggagctcttc
gaggcccgcacccccaagggcgcgtccccgatcgccgaggccgacggccgcatcacgatc
gaggagaccgacaagagccgcaaggtcatcctgacgcccgacaacggcgacgagccgcac
gtctacccggtgctcaagcgcgccacgctcctggtcgaggacggccagcgcgtgacggtc
ggccaggcgctgcaggtcggcacgctcgaccccaaggaggtcatgcgcgtgcagggtgcc
cgcgaggtgcagaagtacctcgtcaacggcgtccagggcgtgtaccgctcgcagggtgtg
ccgatccacgacaagcacatcgaggtcatcgtgcgccagatgttgcgcaaggtcaccgtg
gtcgaccacggcgacacggcgctgcttcccggcgagatggtcgacctcaagcgctaccag
gcgatcaaccgcgaggcggtcgccggcggcaagcgccctgcgtcgggtcgtcccgagctg
atgggtatcacgaaggcgtcgctcgcgacggagtcgtggctgtcggccgcgtcgttccag
gagaccacccgcgtcctgacgcaggcggccatggagggcaagagcgacccgctcgtcggc
ctcaaggagaacgtcatcatcggaaagctcatccccgccggaaccggccttgcgaagtac
cgcaacgtcacggtcgaggcgacggaggaggccaagagcgagcggtaccccaaccgcatc
ttcgcctcggacggcgcgtacagcgacgccgacctgagctacgtcgacttcgacagcttc
accaccgacgacttcagcgggaactacaactga
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