Micromonospora sp. B006: MicB006_2606
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Entry
MicB006_2606 CDS
T05583
Name
(GenBank) putative secreted pectate lyase
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
micb
Micromonospora sp. B006
Pathway
micb00040
Pentose and glucuronate interconversions
micb01100
Metabolic pathways
micb02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
micb00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
MicB006_2606
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
MicB006_2606
Enzymes [BR:
micb01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
MicB006_2606
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
FLgD_tudor
Beta_helix
Motif
Other DBs
NCBI-ProteinID:
AXO34887
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Position
2719022..2720365
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AA seq
447 aa
AA seq
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MRTRTAVVAALTAALVLTTAAPAPAATGRPSRAAELIGRQALAANDGWAATGTGTTGGSA
AAPERVHVVRTRAELVAALGGDNATNAADATAKIVYVAGTVDGFEGPDGTPLDCADLADP
EYSLPAYLAAYDPATWGRVNPSGPLEAARVRSVANQTRQNQINVGSNTTIIGLRGARLTG
LTLMIDRVDNVIVRNIEFADARDCFPAWSPTDGDTGNWNSQYDQISVRRSEHVWIDHNTF
TDGDNPDSAQPVHFGRPWQVHDGSLDVTHTASLVTVSWNRFTGRDKVMLIGSSNTVGPDV
GRLDVTVRHNLFDGTLQRLPRVRFGRVDVHENHYRLGGPGFAYALGVGVQSALYAENNFF
TLTGDAGPADLLYDWGGTALTERGSWVRQGDRLPRPVSLLAAYNAAHDPDLGGDAGWTPT
LRAARPLPTSLVPLAVDALAGAGRLPL
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
atgcgtacccgaaccgcagtcgtcgcggcgctgaccgccgcgctcgtcctcaccaccgcc
gcgcccgcgccggccgcgaccggacggccgtcccgggccgccgagctgatcggccgccag
gccctcgccgcgaacgacggctgggccgccaccggcaccggcaccaccggcgggtcggcc
gccgcgccggagcgtgtgcacgtcgtgcgtacccgggccgagctggtcgccgcgctcggc
ggcgacaacgccactaatgccgccgacgccaccgcaaagatcgtgtacgtggccggaacc
gtcgacggtttcgaagggcccgacggcacgccgctggactgcgccgacctggccgacccg
gagtactcgctgcccgcctacctggccgcgtacgacccggcaacctggggccgggtgaac
ccgagcgggccgctggaggccgcccgggtgcggtcggtggccaaccagacccggcagaac
cagatcaacgtcggctccaacaccacgatcatcggcctgcgcggcgcccggctcaccggc
ctgacgctgatgatcgaccgggtggacaacgtgatcgtgcgcaacatcgagttcgccgac
gcccgggactgcttcccggcctggtctcccaccgacggcgacaccggcaactggaactcc
cagtacgaccagatctcggtgcggcgcagcgagcacgtctggatcgaccacaacacgttc
accgacggcgacaaccccgacagcgcccagcccgtccacttcggccggccctggcaggtg
cacgacggatcgctggacgtcacgcacaccgccagcctggtcaccgtctcctggaaccgg
ttcaccggccgggacaaggtgatgctgatcggctcgtcgaacaccgtcgggccggacgtg
ggccggctcgacgtcaccgtccggcacaacctgttcgacggcacgctgcaacgcctgccc
cgcgtgcggttcggccgggtcgacgtgcacgagaaccactaccggctcggcgggcccggc
ttcgcgtacgccctcggcgtcggcgtgcagtccgccctgtacgcggagaacaacttcttc
acgctcaccggcgacgccggccccgccgacctgctgtacgactggggcggcaccgcgctc
accgagcggggcagctgggtgcgccagggcgaccgcctgccccggccggtgagcctgctc
gccgcgtacaacgcagcccacgacccggacctcggcggcgacgccgggtggacgcccacg
ctgcgcgccgcgcggccgctgccgacctcgctggtcccgctcgccgtcgacgccctcgcc
ggcgccgggcggctgccgctctga
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