Micromonospora sp. B006: MicB006_4607
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Entry
MicB006_4607 CDS
T05583
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
micb
Micromonospora sp. B006
Pathway
micb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
micb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MicB006_4607
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
micb03019
]
MicB006_4607
03400 DNA repair and recombination proteins [BR:
micb03400
]
MicB006_4607
Enzymes [BR:
micb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MicB006_4607
Messenger RNA biogenesis [BR:
micb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MicB006_4607
DNA repair and recombination proteins [BR:
micb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
MicB006_4607
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
Pribosyltran
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AXO36870
LinkDB
All DBs
Position
complement(5076791..5078911)
Genome browser
AA seq
706 aa
AA seq
DB search
MSQDRTAVRERAEAVLRRLAGDHARLREDQWRAIEALVIDRRRVLCVQRTGWGKSAVYFV
ATALLREGNRHGPTVIVSPLLALMRNQVESAARAGIRARTINSANLDEWDEITAEIHAGA
VDVLLISPERLNNPDFRDGVLPKLAATTGLLVVDEAHCVSDWGHDFRPDYRRLRTFLANL
PERTPVLATTATANARVTQDVAEQLGDALVLRGTLDRESLRLGVLDLPSAAHRLAWLADH
LDRLPGSGIVYTLTVAAATETADFLRGRGWSVASYTGQAEDADRRAAEQDLLDNKIKALV
ATSALGMGFDKPDLGFVVHLGAPPSPIAYYQQVGRAGRAVEHAEVLLLPGVEDAAIWRYF
ASLAFPPEEQVRAVLAALDTERPISTQALEPVVDLRRARLELMLKVLDVDGAVRRVRGGW
LATGEPWVYDEARLRRVADARAAEQRAMREYASTSGCRMRYLREGLDDTGAADCGRCDNC
AGPLFDAAVSGEALTAAQTFLGRPGVTISPKKLWPTGLDAVGVPLKGRIPPAEQALPGRA
VGRLSDLGWGGRLRGLVGPEAPDGPVPDDVVAAVVEVLKAWAHGDDPWPRRPVGVVAVGS
RTRPLLVGSLAERIAAVGRLPLLGHVVPAGPSGGGGPRGNSAQRVRTLHDAFRLPDELAD
ALPGLDGPVLLVDDLVDSGWTMAMVARLLRRAGAPDVLPLALAVAA
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
atgagccaggatcggacggccgtacgggaacgcgccgaagcggtactgcgacggctggcg
ggtgaccacgcccggctgcgcgaggaccagtggcgggccatcgaggcgctcgtgatcgac
cggcggcgggtgctctgcgtgcagcgcaccggctggggcaagtcggccgtctacttcgtg
gccaccgcgctgctgcgcgagggcaaccggcacgggccgacggtgatcgtctcgccgctg
ctggcgctgatgcgcaaccaggtcgagtccgccgcccgcgccggcatccgggcccgcacc
atcaactcggcgaacctcgacgagtgggacgagatcaccgcggagatccacgccggagcc
gtcgacgtgctgctgatcagcccggagcggctgaacaacccggacttccgcgacggcgta
ctgccgaagctggccgccaccaccgggctgctggtggtggacgaggcgcactgcgtctcc
gactgggggcacgacttccggcccgactaccggcggctgcgcacgttcctggccaacctg
cccgagcgcacaccggtgctggccaccacggccaccgccaacgcccgggtgacgcaggac
gtggccgagcaactgggcgacgcgctggtgctgcggggcacgctcgaccgggagtcgctg
cgcctgggcgtactcgatctgccgagcgcggcgcaccgcctggcctggctggccgaccac
ctggaccggctccccggctcggggatcgtctacacgctcaccgtggcggcggccaccgag
actgcggacttcctgcgcggccggggctggtcggtcgcctcctacaccgggcaggccgaa
gacgccgaccggcgggccgccgaacaggacctgctggacaacaagatcaaggcgcttgtc
gccaccagcgcgctcggcatgggcttcgacaagcccgacctcggcttcgtggtgcacctg
ggcgcgccgccctcgccgatcgcctactaccagcaggtcggccgcgccggccgggccgtc
gagcacgccgaggtgctgctgctgcccggcgtggaggacgcggccatctggcggtacttc
gcctcgctcgccttcccgcccgaggagcaggtccgcgccgtgctcgccgcgctggacacc
gagcggccgatctccacccaggccctggaaccggtggtcgacctgcgccgggcccggctg
gagctgatgctcaaggtgctcgacgtggacggcgcggtccgccgggtgcgcggcggctgg
ctcgccaccggcgagccctgggtctacgacgaggcccggttgcggcgcgtcgccgacgcg
cgcgccgccgagcagcgggccatgcgggagtacgcctcgacgtccggctgccggatgcgc
tacctgcgggaagggctggacgacaccggcgcggccgactgcgggcggtgcgacaactgc
gccgggccgctgttcgacgcagccgtctccggcgaggcgctcaccgccgcgcagacgttc
ctcgggcgccccggcgtcacgatctcgcccaagaagctctggccgaccgggttggacgcg
gtgggcgtacccctgaagggccgcatccccccggcggagcaggcgctgcccggccgggcc
gtgggacgcctctccgacctggggtggggcgggcggttgcgcgggctggtcgggccggag
gcgcccgacggcccggtgcccgacgacgtggtggcggccgtggtcgaggtgctgaaggcg
tgggcgcacggcgacgacccgtggccccggcggccggtgggcgtggtcgcggtcggctcc
cggacgcgaccgctgctggtcggctcgctcgccgagcggatcgccgccgtgggccggctg
ccgctgctcggccacgtcgtcccggccggtccgtccggcggcggcgggccgcgcggcaac
agcgcccagcgggtacgcacactgcacgacgccttccgcctgccggacgagctggccgac
gcgctgccggggctggacgggccggtgctgctggtggacgacctggtcgactcgggctgg
accatggccatggtggcgcggctgctgcgccgggccggcgcgccggacgtgctgccgctg
gcgctcgccgtggccgcctga
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