Micromonospora sp. B006: MicB006_5257
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Entry
MicB006_5257 CDS
T05583
Name
(GenBank) hypothetical protein
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
micb
Micromonospora sp. B006
Brite
KEGG Orthology (KO) [BR:
micb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
micb03019
]
MicB006_5257
Enzymes [BR:
micb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
MicB006_5257
Messenger RNA biogenesis [BR:
micb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
MicB006_5257
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
HA2_N
TrbH
ResIII
AAA_30
AAA_19
AAA_22
nSTAND3
AAA
Motif
Other DBs
NCBI-ProteinID:
AXO37519
LinkDB
All DBs
Position
complement(5858225..5860768)
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AA seq
847 aa
AA seq
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MLADVALDLPVRPVLPALVEALRARGAAVLVAPPGTGKTTTAPLAVADAVAGRVVIAQPR
RVAARAAAHRMAALLGGRVGDRIGYAVRGERRSGPRTRIEVVTTGLLVRRLHHDPELPGV
DAVLLDECHERQLDADLALAFSVEARGTLRPDLWLLAMSATPQADRFAALLGAGDPAPVV
RAEAALHPVDRVWAPTPRPVTPPGSGRVDPALLDHVAATVRRALRERDGDVLVFLPGAGE
IAAVAGRLADLREHVAVLPLHGRLPAAAQDAALTPAAGRRVVLATAVAESSLTVPGVRVV
VDAGLSRVPRTDLARGLGALVTVPVSRAAATQRAGRAGREAPGAVYRCWSQATHERLAPQ
PEPEIATADLTGFALELAAWGTPDGAGLALPDPPPPAALAVARETLRTLGAVDDDGRITA
RGRAVAAAGTHPRLARALLDGALRVDADRAAEVVAVLSDDTLGGSGDDLPARWRRLRSGA
DPAATARWRAEVRRLRAALPTGPAPHRGDSGQPVGDRRERLPDDLAAGLLAGLAYPERLA
RVRRPGGSAYLMAGGTAAELAPGSGLSGSAWLAVAVADRSPGAPAARVRLAAPIDEATAR
EAGAALLRSGREVAWAGGDVVAREVVRLGAIELVERQLTTPAPDLVAAALLDGLRQEGPG
LLRWTPEATGLRRRMAFCRHALGEDWPDVSDATLLDRAPEWLGPELVRARRRADLGRADV
AAALRRLLDWRQAARLDELAPERLAVPSGSRVRIDYADPAAPVLAVKLQETFGWRDVPRI
ADGRVPVLLHLLSPAGRPVAVTADLASFWRTGYPQVRAELRGRYPRHPWPEDPTTAEPTR
RAAPRRR
NT seq
2544 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgccgacgtcgccctcgacctgccggtccggccggtgctgccggcgctcgtcgag
gcgctgcgcgcccggggcgccgccgtgctggtggcgcccccgggcaccggcaagaccacc
accgcgccgctcgcggtcgccgacgccgtcgccgggcgggtggtgatcgcccagccccgg
cgggtcgccgcccgtgccgccgcgcaccggatggccgcgctgctcggcggccgggtcggc
gaccggatcggctacgcggtacgcggcgagcggcggtccgggccacgtacccggatcgag
gtcgtcaccaccggcctgctggtgcggcggctgcaccacgacccggagctgcccggcgtg
gacgcggtgctgctcgacgagtgccacgagcggcagctcgacgccgacctggcgctggcg
ttcagcgtcgaggcgcgcggcacgctgcgcccggacctctggctgctggccatgtcggcc
accccgcaggcggaccggttcgccgcgctgctcggcgcgggcgaccccgcgccagtggta
cgcgccgaggccgccctgcacccggtcgatcgggtgtgggcaccgacgccgcgcccggtg
acgccgcccggcagcggccgggtcgatccggcgctgctggaccacgtggccgccacggtc
cgccgggcgctgcgcgaacgcgacggcgacgtgctggtcttcctgcccggggcgggcgag
atcgccgcggtcgcgggccggctggccgacctgcgtgagcacgtcgccgtcctgccgctg
cacggccggctgcccgccgccgcccaggacgcggccctgacaccggccgccgggcggcgc
gtggtgctggcgaccgcggtggcggagagcagcctgaccgtgccgggcgtgcgggtggtg
gtcgacgccggcctgagccgcgtgccccgcaccgacctggcccgagggctgggcgcgctg
gtcacggtgccggtgtcccgggcggcggccacccagcgggccggccgggccggacgggag
gcgccgggcgcggtctaccgctgctggtcgcaggcgacacacgagcggctcgccccgcaa
cccgagccggagatcgccaccgccgacctgaccgggttcgcgctggagctggcggcctgg
ggtacgccggacggcgccggtctggcgctgcccgatccgccgccaccggccgcgctggcc
gtggcaagggagaccctgcgcacgctcggcgcggtggacgacgacggccggatcaccgcg
cggggccgggcggtcgcggcggcgggcacccatccccggctggcgcgggccctgctggac
ggcgcgctccgggtcgacgcggaccgggccgccgaggtggtggcggtgctctccgacgac
acgctgggcgggtcgggggacgacctgccggcccgctggcgccgcctgcgctccggcgcc
gacccggccgccaccgcacgctggcgcgccgaggtacgccggctgcgtgccgccctgccc
accggtccggcgccgcaccgtggcgacagcggacagccggtgggagaccggcgggagcgc
ctgcccgacgatctggccgcgggactgctcgccggactcgcgtacccggagcggctggcc
cgggtgcggcggccgggcgggtccgcgtacctgatggccggcgggaccgcagcggagctg
gcgcccgggtccgggctgtccgggtcggcgtggctggccgtcgcggtggccgaccgctcc
cccggcgctccggccgcccgggtgcggctggccgcgccgatcgacgaggcgaccgcccgg
gaggccggggcggcgctgctgcgctccgggcgcgaggtggcctgggccggcggggacgtg
gtggcccgggaggtggtccggctcggcgcgatcgagctggtcgagcggcaactgaccact
ccggcgccggacctggtcgcggcggcgctgctggacgggctgcggcaggaggggccggga
ctgctgcgctggacgccggaggcgaccgggctgcgccgccggatggcgttctgccgccac
gcgctcggcgaggactggccggacgtctccgacgcgacgctgctcgaccgcgcgcccgag
tggctcgggccggagctggtccgcgcccgccgccgggccgacctgggccgggcggacgtg
gcggcggcgctgcgccggctgctggactggcggcaggccgcccggctggacgagctggcc
ccagagcggctcgcggtgccgagcgggtcgcgggtacgtatcgactacgccgatccggcc
gcgccggtgctggcggtgaagctccaggagacgttcggctggcgggacgtgccgcggatc
gccgacgggcgggtgccggtgctgctgcacctgctctcccccgccgggcggccggtggcg
gtcaccgccgacctggcgtcgttctggcgaaccggctatccgcaggtacgggcggagctg
cgtggccgctacccgcgtcacccgtggccggaggacccgaccactgccgagccgacccgc
cgggccgccccgcgccgacggtga
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