Microbulbifer aggregans: AUP74_00115
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Entry
AUP74_00115 CDS
T04560
Symbol
hrpB_1
Name
(GenBank) ATP-dependent RNA helicase HrpB
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
micc
Microbulbifer aggregans
Brite
KEGG Orthology (KO) [BR:
micc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
micc03019
]
AUP74_00115 (hrpB_1)
Enzymes [BR:
micc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
AUP74_00115 (hrpB_1)
Messenger RNA biogenesis [BR:
micc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
AUP74_00115 (hrpB_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
HA2_N
AAA_22
NACHT
AAA_30
CCT
nSTAND3
ResIII
AAA_16
T2SSE
AAA_23
SLFN-g3_helicase
Helicase_RecD
ABC_tran
Motif
Other DBs
NCBI-ProteinID:
AOS95591
UniProt:
A0A1C9W371
LinkDB
All DBs
Position
complement(126737..130678)
Genome browser
AA seq
1313 aa
AA seq
DB search
MSHSEVNQAGRTLDSVSDELEQRLERCMGRDRYRLRKTLANARRRVKAGKPADRMLEQLQ
HELQSSEALATARREKLPTITWPEALPVVARREEIAALIADNQVVVVAGETGSGKTTQLP
KICLELGRGVYGQIGHTQPRRIAARTVANRIAEELNQPLGHSVGYQVRFTDHSDEHTHVK
LMTDGILLAEIQRDPLLNKYDTLIIDEAHERSLNIDFLLGYLKTILPKRPDLKLIITSAT
IDLEKFSRHFDNAPIIEVSGRTYPVEIHYRPPADSDADLSEQVIGAVEELLHEEKSSGRR
GGDILVFMSGEREIRECAKALRDARIPQLEVLPLYARLSLAEQNKVFHGHKGRRIVLATN
VAETSITVPGIRYVIDPGTARVSRYSYRSKIQRLPVEAISQASANQRAGRCGRVSAGVCV
RLYEERDFEQRPEFTDAEILRTNLAAVILQMLQLRIGDIRDFPFVDPPDERLINDGYKLL
QELQAVDAGGKVTQFGRALSRLPLDPRLGRMLMAAGDNDSLREVLIIVSALAVQDPRERP
AEKRQAADEKHRQWQHEQSDFVSFVQLWDAFEEQRQELSQNQLRKWCQKNYLSWLRMREW
RDIHHQLRVATRELKLKENREPASYEAIHRAILPGLLGNIGVRDENKEFLGCRNRRFHIF
PGSGQFKKPPRWVVAAQLLETSRLFAHTVARIEPDWALAVSEHLVKRSYSEPHYDARGGR
VMAFEKVTLYGLVLVEKKRIHYGKLNPQVAREVFIRQALVEQRYRGKGRFFKHYRALLEE
LEDLEAKSRRRDIVVDDEVIFRFFDERLPEEIVNLAGFEHWRKQAESRDPELLMIPRDLL
MQQSADHIGEAQFPDSLQTGGIEFPLSYHFEPGSAEDGVSIRVPVAALHQVPEARLSWLV
PGLLRDKCIALVKGLPKQWRKYFVPVPAAVDRALPRMKPDNTPLWQVLALELKRQTAQEL
PEEAWARAEASLEDFYRFNIQVSDEAGKLLDQGRDLSLLQERYRDRVQREIATAGDDFER
EGIIEWDFGDLPETHTMDQGGLKMRAYPALEDKGDSVALRLLDNPAEARRISRTGICRLA
LLHLPDKVKYLRKELLRGKELGLSAADLGRREEVADDIMLAAARELFWPDEQWPRSQADF
NAALQREGELVEVAQEIAALLVKSLGDLVPLRKAIKQQKNLAVAMAVGDIQQQLAGLFYR
GFLFDTPREWLRQYGRYLKGVSMRLEKAALDPNRDRRLQAEYHEAAQSFTDLLAQHSFRA
LMAEPALVQYRWLLEEFRISLFAQSLKTLMPVSVKRLRKQWQEIEQAGLRFSS
NT seq
3942 nt
NT seq
+upstream
nt +downstream
nt
atgagtcacagcgaagtcaatcaagccggcaggacactggatagcgtcagcgacgagctc
gaacagcgcctcgaacgttgtatggggcgtgatcggtatcgcctgcgcaagaccctggcc
aatgcacgccggcgagtgaaagccggcaagccagcagaccggatgcttgagcagctccag
cacgagctgcagtcctccgaggcgctggccactgcacgccgggagaaactgccgacgatt
acctggccggaggcgctgccggtggtggcgcgccgcgaggagatcgcggcgctgattgcc
gacaaccaggttgtcgttgtcgcgggtgaaaccggctccggtaagaccacccaattgccc
aagatctgcctggagctcggccgcggtgtctatggccagattgggcacacccagccgcgg
cgaattgccgcgcgcacggtcgccaaccgcattgccgaggagctcaatcagcccctgggg
cactccgttggctaccaggtgcgcttcaccgatcacagtgacgagcacactcacgtcaaa
ctgatgaccgatggtattctgctggcagagatccagcgggacccgctgctgaacaagtac
gataccctgatcattgatgaggcccacgaacgcagcctcaacatcgacttcctgctcggc
tatctcaaaaccatcctgccgaagcgccccgacctcaagctgatcattacctcggccacc
atcgacctggaaaaattttcccggcatttcgacaacgcgccgatcattgaagtctcgggt
cgcacctatccggtggaaatccactatcgcccgccggcggacagcgacgctgacctgagc
gagcaggtgatcggggcggtggaggagctgctgcacgaggaaaagagcagcggccggcgg
ggcggtgacattctggtgttcatgagcggggaacgggaaatccgcgaatgtgccaaggcg
ctgcgagatgcccggatcccacaactggaagtgctaccactctatgcacggctcagtctc
gccgaacaaaacaaggtttttcacggtcacaagggccgacgcatcgtgctggccaccaac
gttgcggaaacgtccatcaccgtgcccgggatccgctatgtgatcgatcccggcaccgcg
cgggtgagtcgctacagctaccgcagcaagatccagcgcctgccggtcgaggcgatttcc
caggccagcgccaaccagcgcgcaggccgctgtggacgggtcagtgcgggtgtctgtgtg
cgcctctacgaggagcgcgatttcgagcagcggcccgaatttaccgatgcggaaatattg
cgcactaacctggcggcggtgatcctgcagatgctgcaattgcgcattggcgatatccgc
gattttccctttgtggatcctcccgatgagcggctgatcaacgatggttacaagctgctg
caggagctgcaggcagtggatgccgggggcaaggtgacccaatttggccgggcactgtcc
cgtttgccgctggatccacgccttggccgaatgttgatggcggcgggggacaacgacagc
ctgagagaggtgttgatcatcgtcagcgccctggccgtgcaggacccgcgcgagcggcct
gccgagaagcgccaggctgcggatgagaagcaccgccagtggcagcatgagcagtccgac
ttcgtgtccttcgtgcagctctgggatgcgtttgaagagcagcgtcaggaactgagtcag
aatcagttgcgcaagtggtgccagaaaaactacctgtcctggctacgcatgcgcgaatgg
cgggacatacaccatcagctgcgggtggccactcgcgaactgaagctgaaggaaaaccgc
gagccggcttcctatgaagcgattcaccgggcaatcctgccggggctcctcggcaatatc
ggtgtgcgtgacgagaacaaggaattcctcggctgccgcaaccgtcgcttccacatcttt
cccggcagtggccagttcaaaaaaccaccccgctgggtagtggccgcacagttgctggag
accagccgcctgtttgcgcacaccgtcgcccggatcgagccggactgggcgctggcggtg
tcagagcacctggtcaagcgcagttactccgaacctcattacgatgcccgtggtgggcgc
gtgatggcgttcgagaaggtaaccctgtacggcctggtgctggttgaaaagaaacgtatt
cactacggcaaactgaatccgcaagtggcgcgcgaggtttttattcgccaggcacttgtc
gagcagcgttatcgtggcaagggacggttcttcaaacactaccgggcactgctcgaagag
ctggaagacctggaagccaagtcccggcggcgggatatcgtcgtcgacgacgaggtgatt
ttccgcttcttcgatgagcggctgccggaggagattgtcaatcttgccggattcgagcac
tggcgcaagcaggccgaatcccgcgatcccgaattgttgatgatcccccgtgacctgctg
atgcagcagagcgcagatcatatcggcgaggcacagttccccgacagtcttcagactggt
ggtatcgaatttccgctcagttatcacttcgagccgggcagtgccgaagacggggtgagt
atccgcgtgcctgtggcagcgcttcatcaggtgcctgaggcgcggctgtcatggctggtg
ccggggcttctgcgcgataagtgcattgcgctggtgaaaggactgcccaagcagtggcgt
aaatactttgtaccagtgccggcggcggtggacagggcattgccgagaatgaagccggac
aacacacccctgtggcaagtgctggcactggagttgaagcgccagacggcacaggaactt
cctgaggaggcctgggcgcgcgctgaagccagtctggaagacttctaccgctttaatatc
caggtgtcagatgaggccggaaagctgctcgaccaggggcgtgacctgtcgctgttgcag
gagcgctatcgggatcgggtgcaacgggaaatcgccacggccggagacgacttcgaacgg
gaggggataatcgagtgggatttcggcgatctgccggagacccatacgatggatcagggc
ggcctcaagatgcgggcttatcccgcccttgaagacaagggggacagcgtggccctgcgg
ctgctggacaaccccgccgaagcgcggcgtatcagccgcaccggtatctgtcgcctggcc
ctgttgcacctgccggacaaagtgaaatacctgcgcaaagagctgctgcgcggcaaggag
ctggggctctctgccgcggatctgggccgtcgcgaggaagtcgctgacgatatcatgttg
gcggcagcgagagagttgttctggcccgacgaacagtggccgcgctctcaggcggacttc
aacgctgcactgcagcgcgagggggagttggtagaggttgcccaggaaattgccgcactg
ttggtcaagtcgctcggcgacctggtgccgctgcgcaaggcgatcaagcaacagaaaaat
ctcgccgtggccatggccgtcggtgatattcagcagcagctggccggactcttctatcgc
ggtttcctgttcgatacgccgcgggagtggctgcgccagtacggtcgctacctcaagggg
gtctccatgcgactggaaaaagcggcgctggatccaaaccgtgaccggcgcctgcaggcc
gaataccacgaggccgcgcaatccttcacggatctgctcgctcagcactccttccgcgcg
ctgatggctgagccggctctggttcagtaccgctggctactggaggaattccgtatctca
ctatttgcccagtctttaaagaccctgatgccggtatcggtgaaacgactgcggaaacaa
tggcaggaaatcgagcaggctggcctgcgtttctcctcgtaa
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integrated database retrieval system
