Microbulbifer aggregans: AUP74_01199
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Entry
AUP74_01199 CDS
T04560
Symbol
rnr
Name
(GenBank) Ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
micc
Microbulbifer aggregans
Pathway
micc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
micc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AUP74_01199 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
micc03019
]
AUP74_01199 (rnr)
03016 Transfer RNA biogenesis [BR:
micc03016
]
AUP74_01199 (rnr)
Enzymes [BR:
micc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
AUP74_01199 (rnr)
Messenger RNA biogenesis [BR:
micc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AUP74_01199 (rnr)
Transfer RNA biogenesis [BR:
micc03016
]
Prokaryotic type
tRNA degradation factors
AUP74_01199 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
HTH_12
RNase_II_C_S1
OB_Dis3
CSD
Motif
Other DBs
NCBI-ProteinID:
AOS96659
UniProt:
A0A1C9W687
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All DBs
Position
1375870..1378692
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AA seq
940 aa
AA seq
DB search
MTTFVALSKFPGSLRESPERGDCPQTMEAVLTQKKIQIDDDPHAKREAEKYDKPVPSREF
LLQLLEQQPGPVAWEAVADALGLEDEDRREGVRRRLIAMSRDGEIASNRAGDFGVLDKMN
IVRGRVIGHRDGFGFVSPRDGGDDLFLSHRQMRKVFDGDEVLVRETPGGFRGKREGAVIR
VIKHNTQELAGRLYRENGICFVRPENPRINLDVLVTEEKSAGAGHGQYVVVNITQQPGRD
VLPQGEVSEVLGDHLAPGMEIDVAIRNYGIPHEWPAAVLAETDPIPAEVVEEDKKGRVDL
RQLPLVTIDGEDARDFDDAVFCESLGDGSWKLLVAIADVSHYVRPGSALDEEAHSRGNSV
YFPDFVVPMLPEKLSNGLCSLNPEVDRLCMVCEMHIDDAGSIRDYRFFEGVMRSHARLTY
NKVGQMIAERGDRSSGIRKQYSAVVPHLDNLHDLYRALRGARDRRGAIDFETTETRIIFD
DQRKIERIVPVQRNDAHKLIEECMLAANVCAAKLMELSEVPALYRVHDVPKEEKLSNLRE
YLGELGLRLPGGAEPQPMDFQLLLNQVEGRPDAHIIQMMLLRSMNQAVYQPENRGHFGLD
YEAYAHFTSPIRRYPDLLLHRALRWLIRNGSANARPVAKKVHVVPGAEAIPRERILPYDM
AAMVQLGEHCSMTERRADDATRDVVSWLKCEYLQEHVGETYPGVVSAVTGFGLFVELSDF
YVEGLIHVSSLPKDYYRFDQAHQRLVGERSGARYHLGDPVMVQVARVDLDERKVDFLLES
VLPRPKRERTDVSPRAMEMAVEHQEERERRGKGRKNGGAEAKPAGKGAAASPWKKRPQTA
PGEAPFRKRKVGSEEAVPVASEPQRPLDPGTVAEGHEGDGEAPRRRRGPKRTPPRKGGKR
PAVAARKAAHKAEKAAKAKKKSFKGKKKPGRKGPAKSKKK
NT seq
2823 nt
NT seq
+upstream
nt +downstream
nt
atgacaaccttcgtagcgctgtccaaattccccggatccctccgggagtcgccagagagg
ggcgactgcccccagacaatggaagctgttttgactcagaaaaagatccagattgacgat
gatccccacgccaagcgcgaggcggagaaatacgataaacccgtacccagtcgagagttc
ctgctgcagctgttggagcagcagcccggtcctgttgcctgggaggcggtcgcagatgcg
ctcggtctcgaggacgaggaccgccgtgagggtgtgcgccggcggctgatcgccatgtcc
cgggatggcgagatcgccagtaaccgcgccggggacttcggcgtgctcgataaaatgaac
atcgttcgcggccgggtgatcggtcaccgggatggtttcggttttgtctccccgcgggac
ggtggtgatgatctgtttctgtcccatcgccagatgcgcaaagtgttcgacggcgatgag
gtgctggtgcgggagacccccgggggcttccgcggcaagcgcgagggtgcggtgatccgc
gtcatcaagcacaacacccaggagctggccggccggctgtaccgtgaaaatggtatctgc
ttcgtgcgcccggagaatccgcgtatcaacctggatgtgctggtgacggaagagaagtct
gccggagccggccatgggcagtatgtggtggtcaatatcacccagcagccgggccgcgac
gtgctgccccagggcgaggtttctgaggtgctgggggatcacctggccccagggatggag
atcgatgtcgccatccgcaattacggtattccccacgagtggccggcggcagtgctggcg
gagacggacccgattcccgccgaggtggttgaggaagacaagaagggccgggtggacctg
cgccagttaccgctggtcaccatcgatggggaggatgcccgggatttcgacgatgcggtg
ttctgtgagtcactcggcgacggcagctggaagctactggtggccatcgccgatgtttcc
cactacgtgcgtcccggcagcgcgctggatgaagaggcccacagtcgcggtaactcggtc
tatttcccggattttgtagtgcccatgctgcccgagaaactctccaacgggctctgttcc
ctgaatccggaggtggatcggctgtgcatggtgtgcgagatgcacatcgatgacgccggc
agtattcgcgattaccgctttttcgagggcgtgatgcgcagccacgcgcggctcacctac
aacaaggtgggacagatgatcgccgagcgcggcgaccgcagcagtggcattcgcaagcag
tactcggcggtggtgccgcacctggacaatctgcacgacctctaccgcgctctgcgcggc
gcccgcgatcgtcgcggtgcgattgatttcgagaccacggaaacccgaatcatcttcgac
gaccagcgcaagatcgagcgtatcgtgccggtgcagcgcaatgatgcgcacaaattgatt
gaggagtgcatgctggccgccaacgtctgcgcggccaagctgatggagctttccgaggtg
cccgccctctatcgtgtgcacgatgtccccaaagaggaaaagctcagcaacctgcgcgag
tacctgggtgaactgggtctgcgcctgcccggcggtgccgagccgcaaccgatggacttc
cagctgctcctcaaccaggtggagggccgcccggacgcgcacatcattcagatgatgctg
ttgcgctccatgaatcaggcggtctaccagccggaaaaccggggccacttcggtctcgat
tacgaggcctatgcccacttcacctcgccgatccgccgctatccggacttgctgctacac
cgtgcgctgcgctggctgatccgcaacggcagcgccaatgcgcgcccggtggcgaaaaaa
gtgcatgtggttcccggtgcagaggcgattccccgcgagcggattctgccttacgacatg
gctgccatggtccagctcggtgagcactgctcgatgaccgagcgtcgcgccgacgatgcc
acccgcgatgtggtcagttggctcaagtgcgagtacctgcaggagcatgtgggtgagacc
tatcccggggtcgtcagtgctgtcaccggtttcgggctattcgtggaactcagcgacttc
tacgtggagggcctgatccatgtcagctctctgcccaaggattactaccgcttcgaccag
gcccatcagcgcctcgtcggtgagcgcagtggtgcccgctaccacctcggcgatccggtg
atggtgcaggtggcccgtgtggatctggatgagcgcaaggtcgatttcctgctggagtcg
gtgctgccccgtcccaagcgtgagcgtaccgatgtcagcccccgcgccatggagatggcg
gtagaacaccaggaggagcgggagcgtcgcggcaagggcaggaaaaacggtggcgccgag
gcgaagccggccggcaaaggcgcggcggcttcgccctggaaaaaacgcccgcaaaccgca
cccggcgaggctccgtttcgcaagcgcaaagtgggctcagaagaggccgtgccggtggct
tcggagccgcagcgcccgctggacccagggaccgtagccgaagggcacgagggcgatggc
gaggcgccccggcgtcgtcgcgggcccaagcgtacgccgccgaggaagggcggcaagcgc
ccggcggtcgccgcgcgcaaggcggcccacaaagccgaaaaggctgccaaagcgaagaag
aaatctttcaaaggcaagaagaagccgggccgtaaggggccggccaagagtaagaagaaa
tag
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