Microbulbifer aggregans: AUP74_01370
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Entry
AUP74_01370 CDS
T04560
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
micc
Microbulbifer aggregans
Pathway
micc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
micc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AUP74_01370 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
micc03021
]
AUP74_01370 (rpoB)
03400 DNA repair and recombination proteins [BR:
micc03400
]
AUP74_01370 (rpoB)
Enzymes [BR:
micc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AUP74_01370 (rpoB)
Transcription machinery [BR:
micc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AUP74_01370 (rpoB)
DNA repair and recombination proteins [BR:
micc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AUP74_01370 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
7TMR-HDED
Motif
Other DBs
NCBI-ProteinID:
AOS96819
UniProt:
A0A1C9W6N6
LinkDB
All DBs
Position
1558725..1562798
Genome browser
AA seq
1357 aa
AA seq
DB search
MAYSYTEKKRIRKDFGKLPKVMDVPFLLAIQLDSYRKFTQADSRPDDRLDVGLQAAFKSV
FPIVSYSGNAALEFVSYTLGKPAFDVQECTLRGVTYACPLRVRVRLIIYDKESANKSIKD
IKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKLLYAARV
IPYRGSWLDFEFDPKDLVYVRIDRRRKLPATILLRALGYSSEEMLDMFFDTSTFELHDDS
VSLELIPSRLRGDVASFDIKDGKGKVIVEEGRRITPRHIRQLEKAGVDRLDAPVEYLHGR
VLAHDVIDESTGEVAVECNAEITEEVVGKLRALNVKKIQTLYTNDLDRGPFISDTLRSEP
SRTQLEALVEIYRMMRPGEPPTKESAESLFENLFFTDERYDLSAVGRMKFNRRLGREDET
GAGTLSKEDIVDVLKTLVEIRNGNGMVDDIDHLGNRRVRSVGEMAENQFRVGLVRVERAV
KERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRVSALGP
GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLATYARANHYGFLESPYRKVV
DGQVTDDVEYLSAINEANYVIAQASAAVDDEGRFTDELVSVRFKNEFSLKPPAEIQYMDV
SAKQVVSVAAAMIPFLEHDDANRALMGSNMQRQAVPTLRAEKPLVGTGMERTVARDSGVC
VVARRGGVIERVDASRVVVRVHDDEVEAGEAGVDLYSLTKYTRSNQNTCINQRPIVKTGD
VVARGDILADGPSVDLGELALGQNMRIAFMPWNGYNFEDSILISERVVQEDRFTTIHIQE
LTCIARDTKLGSEEITADIPNVGESALNKLDESGIVYIGAEVGAGDILVGKVTPKGEAQL
TPEEKLLRAIFGEKASDVKDTSLRAPSGTRGTVIDVQVFTRDGLQKDQRSLDIEKAQMDQ
VRKDLNEEYRIVEAATFERLQSALEGQKVAGGKGVKKGDVLSADVLANLPREDWFKLRMA
EESLNEQLEKAEAQLKDRRKLLDEQFEDKKKKLESGDDLAPGVLKIVKVYLAIKRRIQPG
DKMAGRHGNKGVISVIKPVEDMPYDENGEPVDIVLNPLGVPSRMNVGQVLEMHLGMAAKG
LGVKIDRMIKEKQEAEKIRGFLGEVYNSTGGRQEELDQLTDEEVLAMSENLRRGVPMATP
VFDGADEGEIKKLLRLADVPDSGQITLYDGRTGDAFERPVTVGYMYMLKLNHLVDDKMHA
RSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVEGRTKMY
KNIVDSDHRMEPGMPESFNVLVKEIRALGMNFELEHD
NT seq
4074 nt
NT seq
+upstream
nt +downstream
nt
atggcttactcatacactgagaaaaaacgtatccgcaaggattttggcaaactgccaaag
gtcatggatgtgcctttcctgcttgcgatacagctggattcttatcgcaaattcacacag
gccgattctcgccctgacgacagactggatgtcggactgcaagcggcgtttaagtccgta
tttccgattgtcagctactccggcaatgctgcgctggagttcgtaagctacacgctgggt
aagccggcgttcgacgtacaggaatgtactctgcgcggtgtgacttatgcatgcccgctg
cgggtgcgcgtgcgtctgattatttacgataaggagtctgccaataagtccatcaaggac
atcaaagagcaggaagtctacatgggcgagattccgctcatgaccgaaaacggtaccttc
gtaattaacggtaccgagcgtgtgatcgtatcccagttgcaccgttccccgggtgtgttc
ttcgatcatgacaaaggcaagactcattcttccggcaagctgctgtacgccgcccgcgta
atcccctaccgcggttcctggctggacttcgagtttgacccgaaggacctcgtttacgta
cgtatcgaccgtcgccgcaagttgccggcgactatcctgctgcgtgccctcggatacagc
tccgaggaaatgctggatatgttcttcgataccagcaccttcgaactgcatgacgattct
gtcagcctggagctgatcccgtcccgcctgcgtggtgatgttgcctcctttgatatcaag
gatggcaagggtaaggtgatcgtagaagaaggccgccgtatcactccgcgtcacatccgc
cagcttgaaaaagcgggtgttgatcgcctcgacgcgccggtggaatatctccacggccgt
gttctggcccatgacgtgatcgatgagtccaccggcgaagtggctgtcgagtgtaacgcc
gagatcaccgaagaggtggtcggcaagttgcgtgcgctgaacgtcaagaaaatccagacg
ctgtacaccaacgatctggaccgcggtccgttcatttccgacacgctgcgcagtgagccg
tcccgcacccagctcgaggcgctggtcgagatctatcgtatgatgcgtcctggcgaaccg
ccgaccaaggaatccgctgagtcgctgttcgagaacctgttcttcaccgacgagcgctac
gacctgtctgccgtcggccgcatgaagttcaaccgtcgcctcggccgcgaggacgagact
ggtgcgggcaccctgagcaaagaagacatcgtcgatgtcctcaagaccctggtggaaatc
cgcaacggtaacggcatggtggacgatatcgaccacctgggtaaccgtcgcgtgcgctcc
gtgggtgaaatggccgaaaaccagttccgcgtgggcctggtccgcgtcgagcgcgcggta
aaagagcgcctgtccatggccgagtccgaaggactgatgccgcaggatctgatcaatgcc
aagccggtggccgctgcggtgaaggagttcttcggctcctcccagctgtcccagtttatg
gaccagaacaacccgctgtcggaagtgacccacaagcgtcgtgtttctgcactcggcccg
ggcggtctgacccgcgaacgcgcaggcttcgaggtccgcgacgtacacccgacccactac
ggccgcgtgtgtccgattgagaccccggaaggtccgaacatcggtctgattaactcgctg
gcgacttacgcccgcgccaaccactatggattcctcgaaagcccgtaccgcaaggtagtg
gacggccaggttaccgatgacgtggaatacctgtccgcgatcaacgaagccaactacgtg
attgcccaggcctccgctgctgttgacgacgagggccgctttactgatgagctggtcagc
gttcgcttcaagaacgagttcagcctgaagccgccggcggagatccagtacatggatgtc
tctgccaagcaggtggtttccgtggctgcggcgatgattccgttccttgagcacgacgac
gccaaccgcgccctgatgggctcgaacatgcagcgtcaggccgttccgaccctgcgcgcc
gaaaagccgctggtcggcaccggtatggagcgtaccgttgcacgcgactccggcgtctgt
gtggttgcccgccgcggtggtgtgatcgagcgcgtcgacgcgagccgcgtcgttgtccga
gtacacgatgacgaagtggaagccggtgaagccggtgtggatctgtacagcctgaccaag
tacacccgctccaaccagaacacctgtatcaaccagcgtccgatcgtgaagaccggcgac
gtggttgcccgcggcgatatcctcgccgacggtccgtctgtggatcttggagagctggcg
ctgggccagaacatgcgcatcgcgttcatgccctggaacggctacaacttcgaggactcc
atcctcatctccgagcgcgtggttcaggaagatcgctttaccaccattcacatccaggag
ctgacctgtatcgcgcgcgataccaagctgggcagtgaagagatcaccgcggatatcccc
aatgtgggtgaatctgcgctgaacaagctggatgaatccggcatcgtctatatcggtgcg
gaagtgggcgccggtgacattctggtcggtaaggtaacgccgaagggtgaagcccagctg
actccggaagagaaactgctgcgcgccatcttcggtgagaaggcgtctgacgttaaagat
acttccctgcgtgcgccgagcggcacccgcggtaccgtaatcgacgtgcaggtcttcacc
cgcgacggcctgcagaaggaccagcgttccctcgatatcgagaaggcgcagatggatcag
gtgcgcaaggacctgaacgaagagtaccgcatcgttgaagcggctactttcgagcgcctg
cagtccgctctggaaggccagaaagtggccggtggcaagggcgtcaagaaaggtgacgta
ctctccgccgatgtactggcaaacctgccgcgcgaagactggttcaagctgcgcatggcc
gaggaaagcctgaacgagcagctggaaaaagcggaagcgcagctcaaagatcgtcgcaag
ctgctggacgagcagtttgaagacaagaagaaaaagctcgagtccggcgatgacctggcc
ccgggcgtgctgaaaatcgtcaaggtttacctggcgatcaagcgtcgcatccagccgggc
gacaagatggccggtcgccacggtaacaagggtgtgatctccgtgatcaagccggtggaa
gacatgccgtacgacgagaacggcgagccggtcgacatcgtcctgaacccgctgggcgta
ccgtcccgtatgaacgtcggtcaggttctggagatgcacttgggtatggctgccaaaggc
ctgggtgtgaagatcgaccgcatgatcaaggagaagcaggaagccgagaagattcgcgga
ttcctgggtgaggtttacaactccaccggcggtcgtcaggaagagctggaccagctgacc
gacgaagaagtgctggcgatgtcagagaacctgcgtcgtggtgtgccgatggcgacaccg
gtcttcgacggtgccgacgagggcgagatcaagaagctgctgcgtctggcggacgtgcct
gactccggtcagatcactctgtacgacggtcgtaccggtgatgccttcgagcgtccggta
acagtcggctacatgtacatgctgaagctgaaccacctggtggacgacaagatgcacgcg
cgttccaccggttcctacagcctggttacccagcagccgctgggtggtaaggcgcagttc
ggtggccagcgcttcggtgagatggaggtgtgggctctggaagcatacggtgcagcctac
accctgcaggaaatgctcacggtcaagtccgatgacgtggaaggccggaccaagatgtat
aaaaacatcgtggactccgaccaccgcatggagccgggtatgccggaatccttcaacgta
ctggtcaaggaaatccgtgcgctcggcatgaatttcgagctggagcacgactga
DBGET
integrated database retrieval system
