Microbulbifer aggregans: AUP74_02640
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Entry
AUP74_02640 CDS
T04560
Symbol
rne
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
micc
Microbulbifer aggregans
Pathway
micc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
micc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AUP74_02640 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
micc03019
]
AUP74_02640 (rne)
03009 Ribosome biogenesis [BR:
micc03009
]
AUP74_02640 (rne)
Enzymes [BR:
micc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
AUP74_02640 (rne)
Messenger RNA biogenesis [BR:
micc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AUP74_02640 (rne)
Ribosome biogenesis [BR:
micc03009
]
Prokaryotic type
rRNA processing factors
AUP74_02640 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AOS98037
UniProt:
A0A1C9WA53
LinkDB
All DBs
Position
3004900..3007917
Genome browser
AA seq
1005 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQWLYDLDIENRTRQQKKANIYKGKITRVEPSLEAAFVDY
GEERHGFLPLKEISREYFLKQPKDIEGRVKIKDVVKEGMEVIVQVDKEERGNKGAALTTF
ISLAGRYLVLMPNNPRAGGISRRIEGDERSDLRDALSEVEVPSGMGIIVRTAGVGRSGEE
LQWDLNYLLQLWDAIKTEADTSKAPHFLFQESNVIIRAIRDYMRDDIGEVIVDDKGAYQL
AAEFARQVMPQYASKVKYYEDAIPLFNRYQIESQIETAFEREVKLPSGGSIVIDVTEALV
SIDINSSRATKGGDIEETARNINLEAADEIARQLRLRDMGGLVVIDFIDMQNKSNQREVE
KRMEKALSMDRARVQIGRISRFGLLEMSRQRLRPSLGETTFRVCPRCSGQGTIRGTKSLA
LSILRLVEEEAKKERSAEIRAICPVNVATYLLNEKRGAISNIEARNKTRVVVVPNAELET
PHFEVQRLRDDDTATLETSYKIAGTIEDTTAKAEEEPLRPIAQPAVQQITHTAPAPTPVA
KPKKKEKEEEKAEPGLIKRLIAAIAALFSGEEETTKKHKKTKGRGKNYQQRNRGQRRGGR
GNRGQRRREEGDKREQARDEKRADKREERKQDKREERKEDKREESRDETSAERPQRRRRR
RRGGEGRRRREEQQATATEQENQVVEEATEESVASSTDEQRPARRPSNVRGRPQPRRRGR
RGGNAAAAAVAQNQEELNQEVNEAIDEAEGEAKVSADKQRSQKDKTQAPEASVPAETAET
AKPAAAEPQAEKKRKPTPAAQPQAEVVEPQQKEQPEERPAPEATAPAEVTETAPSATPEK
VQAPVAAEKAAPKAEPEAAEQAPVAESETLAEQAVAEVAAEEPAPVKGEDAEKAKVDYAT
SEAEEFALDVAAEEAPSVTTAAEAPAAEQAPMTRASNDPRVNPRPLQELAIVTEHRDIGE
LRPLDTAQPAGIQHAPRQLERPANDPRVSRRAEQANDSGNDAEVG
NT seq
3018 nt
NT seq
+upstream
nt +downstream
nt
atgaagagaatgctgatcaacgcaactcaacctgaagagttgcgcgttgccctggtcgac
ggccagtggctgtacgacctcgatatcgaaaaccgcacccgccagcagaaaaaggcgaac
atctacaagggcaagatcacccgcgtagaaccctctctcgaagctgccttcgtcgactac
ggcgaggagcgtcatggcttcctccccctcaaggaaatttcccgcgagtacttcctgaag
cagcccaaagacatcgagggtcgcgtcaagatcaaagacgtggtcaaggaaggaatggag
gtcattgtccaggtggacaaagaggagcgcggcaacaaaggcgcggccctgaccacattc
atcagcctcgccggtcgctacctggtgctgatgccgaacaatccccgcgccggtggcatc
tcccgccgcatcgaaggtgatgagcgctcggatctgcgcgatgccctctcagaggtcgaa
gtaccctcgggcatgggtatcatcgtgcgtaccgccggcgtaggccgcagcggtgaagag
cttcagtgggacctcaattacctcctgcagctctgggatgccatcaaaactgaagctgac
acctccaaggcgccgcatttcctgttccaggagagcaacgtcatcattcgcgcaatccgc
gattacatgcgcgatgacatcggtgaggtcatcgtcgatgacaagggtgcctaccagctg
gcggcggaatttgcccgccaggtgatgccccagtacgccagcaaggtgaagtattacgaa
gacgccattccgctcttcaatcgctaccagatcgaaagccagatcgagaccgcctttgag
cgcgaagtgaagctgccgtccggcggctccatcgtcatcgacgtgaccgaggccctggta
tccatcgacatcaactcctcccgcgccaccaaaggtggggatatcgaggagaccgcccgc
aatatcaacctggaggcggcagacgagatcgctcgccagctgcgcctgcgtgatatgggt
ggcctggtggtcatcgatttcatcgatatgcagaacaagtccaaccagcgtgaagtcgaa
aagcgcatggagaaggccctgagcatggaccgcgcccgcgtccagatcggccgcatctcc
cgcttcggcctcctggagatgtcgcgacagcgcctgcgcccctcccttggcgagaccacc
ttccgcgtctgcccccgctgtagcggccagggcaccattcgcggtaccaagtcgctcgca
ctctccatcctgagactggtggaggaagaggccaagaaagagcgcagtgctgagattcgc
gcgatctgcccggtgaacgtggcgacctacctgctcaatgagaagcgcggtgcgatttcc
aatatcgaagctcgtaacaagacccgtgtagtcgtggtgcccaatgcggaactggaaacg
ccgcacttcgaggttcagcgtcttcgtgatgacgacaccgccacgctggaaacctcttac
aagatcgccggcacaatcgaagacaccaccgccaaggctgaagaggagccgctgcgcccg
atcgcccagccggctgtacagcagatcacacacaccgctcctgctccgactccggtggcc
aagccgaagaagaaggaaaaagaagaggaaaaggccgagcccggcctgatcaagcgcctg
attgccgctatcgccgccctgttctctggcgaagaggagaccactaagaagcacaagaag
accaagggtcgcggcaagaactaccagcagcgcaaccgtggccagcgccgcggtggtcgt
ggcaatcgtggccagcgtcgccgtgaggaaggtgacaagcgcgaacaggcccgtgatgaa
aaacgtgcggacaaacgcgaggaacgcaagcaggacaagcgcgaagagcgtaaagaggac
aagcgcgaggagtccagggacgagaccagtgccgagcgtccccagcgccgtcgtcgccgt
cgtcgcggtggagaaggacgccgtcgtcgggaagaacagcaggccactgccaccgagcag
gaaaaccaggtggtagaagaagctacggaggaatccgttgcgtcttccactgatgaacag
cgtcctgcgcgtcgccccagtaatgtacgcggccgcccacagccccgtcgccgtggacgc
cggggcggcaacgccgctgcagcagccgtggcccagaaccaggaagagctgaaccaggag
gttaacgaggcgatcgacgaagccgagggtgaggccaaggtttccgctgacaagcaacgc
tctcagaaagacaagacccaggcccctgaagcatctgtgcccgcagagactgcggaaact
gcaaagccggccgctgcagagcctcaggctgagaagaagcgcaagccgactcccgcagca
cagccgcaggctgaagtagtcgagccccagcagaaagagcagcctgaagagcgcccagcc
cccgaggcgactgctccggccgaggttactgagaccgcaccttctgccactcccgagaag
gtccaggccccggtagccgctgaaaaagccgcaccgaaagctgaaccggaagcggcggag
caggcaccggtagcggagagcgagacgcttgcggaacaggcggttgctgaagttgccgct
gaagagcccgcacctgttaaaggagaggacgccgaaaaggcaaaggtggactacgccact
tccgaggccgaggaatttgctctggatgttgccgcagaggaagcgccttctgtgaccacc
gcagctgaggctccggccgccgagcaagccccgatgactcgcgccagcaacgatccgcgg
gtaaatccccggccattgcaggagcttgcgatcgtgaccgagcatcgcgatatcggcgaa
ctccgcccgctggatactgcgcaacccgctggcatccagcacgcaccgcgccagctggaa
cgccccgccaatgatccgcgggtctcccgccgggcggagcaggccaacgacagcggtaac
gacgccgaggtaggctga
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