Microbulbifer aggregans: AUP74_02854
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Entry
AUP74_02854 CDS
T04560
Symbol
rtcB_1
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
micc
Microbulbifer aggregans
Brite
KEGG Orthology (KO) [BR:
micc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
micc03016
]
AUP74_02854 (rtcB_1)
Enzymes [BR:
micc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
AUP74_02854 (rtcB_1)
Transfer RNA biogenesis [BR:
micc03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
AUP74_02854 (rtcB_1)
Prokaryotic type
tRNA splicing ligases
AUP74_02854 (rtcB_1)
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Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AOS98249
UniProt:
A0A1C9WAS3
LinkDB
All DBs
Position
complement(3268657..3269865)
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AA seq
402 aa
AA seq
DB search
MPVKMVLNAKASPGTVPVKIYTKEIEHAALEQLKNIAQLPIVYSHVAAMPDVHLGKGATV
GSVIPTVGAIIPAAVGVDIGCGMNAVRTSLQANQLPDSLKSVRAAIEARVPVGFARHKMI
NARESACKDLAPGADRLFEKHPALLKMLRDPQRTWVTQVGTLGGGNHFIEICLDESDQVW
VMLHSGSRGIGNAIGQHFIKLARKDMAVHIHNLPDRDLAYFSEGSQHFDDYVEAVNWGQE
YARVNRQEMMKLVIGCLREYLPPFTLTSEAINCHHNYVVREAHFGRDVFVTRKGAISAQR
DQLGIIPGSMGSRSYIVRGKGNPESFCSCAHGAGRKMSRNAARKRFTRRDLEEQTKGVDC
RKDSGVLDEIPAAYKDIDRVMGNQSDLVDVVHTLRQVICVKG
NT seq
1209 nt
NT seq
+upstream
nt +downstream
nt
atgccagtcaaaatggtactgaatgcaaaagcatccccgggcactgttccggtgaaaatt
tacacgaaagaaattgaacacgctgcgctagagcagctgaagaatattgcccagcttccc
attgtctattcccatgtggcggcaatgccggatgtgcatctgggtaaaggcgccactgtt
ggttctgtaattccaaccgttggtgcaattattccagctgccgttggggtcgatatcggg
tgcggaatgaatgcggtgcgaacatcactgcaagccaatcagttgcccgatagcctcaag
tcagtacgggcggccatcgaggccagggtgccagtaggttttgcccggcacaagatgatc
aatgcgagggagtcagcctgcaaggacctcgctcccggtgcggatcggctattcgaaaag
cacccagcgctgctgaagatgttgcgggacccacagcgcacctgggttacccaggtgggc
acccttggtggaggaaaccatttcatcgagatctgtcttgatgagagcgatcaggtatgg
gtcatgctgcactctggaagccgaggtatcggcaatgcgatcgggcagcatttcatcaag
ctggccagaaaggatatggcagtacatatccacaacttgccggatcgtgacctggcttac
ttcagcgagggcagtcagcacttcgatgactacgtggaggcagttaactgggggcaggaa
tacgcccgcgtaaacagacaggagatgatgaagcttgtcatcggttgtctgcgcgaatac
ttgccgccgtttacgctgacgtccgaggccatcaactgtcaccacaactatgtggtgagg
gaagcacactttggtcgcgatgtgtttgtaacccgcaagggcgccatcagtgcacagcga
gaccagctgggcatcatccccggctcgatgggctctaggtcctatatcgtacgggggaag
gggaacccggagtccttctgttcctgtgcccatggcgccggacggaaaatgagccgcaat
gcagcgcgcaagcgttttacccggcgtgatcttgaggaacagacaaagggggtcgattgc
cgaaaggacagtggggtactcgatgagatcccggctgcctataaagatatcgaccgtgtc
atgggaaaccagtcagacctggtggacgtggttcacacgctgcgacaggtgatctgtgtg
aagggatga
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