Microbacterium sp. RG1: EHF32_06115
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Entry
EHF32_06115 CDS
T10164
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mice Microbacterium sp. RG1
Pathway
mice03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mice00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
EHF32_06115
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mice03400
]
EHF32_06115
Enzymes [BR:
mice01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
EHF32_06115
DNA repair and recombination proteins [BR:
mice03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
EHF32_06115
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
LigD_N
DNA_ligase_A_C
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QCQ16332
UniProt:
A0A4P8KP94
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All DBs
Position
1263959..1266334
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AA seq
791 aa
AA seq
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MSAREQTVDVEGRRIRVSHLDKVLYPATGTTKAEVIDYYARIAPALLPHLDGRPVTRKRW
PDGVDAESFFAKNLERGAPEWLRRQSIEHSTGTKEYVLVDDVATLVWLAQTASLELHTPQ
WRFDADGLPSHPDRLVLDLDPGDDIDLPTVAEVARWAREILTDAGLTPFPVTSGSKGIHL
YCALPAGQTSEAASALAKELARSLEADHPDLVVSSMSRALRPGKVFVDWSQNNGKKTTIA
PYSLRGRARPTVAAPRTWEELDDPGLAQLDLTQVLTRAETDGDLLAPLRPRRGAADPLRT
YISKRSADRTPEPVPSDPAADAASGGALRFVIQEHHARRLHYDLRLEHDGVYVSWAVPKG
VPETTKRNHLAVMTEDHPLSYGTFEGKIPAGEYGAGEVTIWDTGTYEAEKWRPDEVIFTV
TGREGGPLGTVRLALIRTDGEGERSTWLLHRMKDEAVAAASAAPWPDELSPSRLRPMLAE
NSTSGLAAAATRRWGEPWAEMKWDGVRALAFWDGERMLLRARSGTDITDRYPELTADPGL
GRAACILDGEIVALDERGRPSFPVLQSRMHLTKAGEIRREAERVPVHLHVFDVLALDGED
LTALPLRERRTHLDGLARDLNPPWIVPPVFDDLDAALEASTAFSLEGVMVKNPASVYRPG
RRSDQWLKIKHVAAQEVVIGAIRPGRHGRGGIGSLLMGVPSPEGLRYVGRVGTGFSEREL
RRLDEVLQPLRTDASPFLDVPRADASDALWVRPEVVAEVGYAEVTPDGRLRQARWRGLRP
DKGPDEVRDEA
NT seq
2376 nt
NT seq
+upstream
nt +downstream
nt
atgtccgcacgtgagcagaccgtcgacgtggagggtcgccgcatccgcgtcagccatctc
gacaaggtgctctatcccgccaccggcaccaccaaggccgaggtcatcgactactacgcg
cgcatcgccccggcgctgctcccccacctcgatggccgccccgtgacccgcaaacgctgg
ccggacggcgtggacgccgagtccttcttcgcgaagaacctcgagcgcggcgcgcccgaa
tggctacgccgtcagagcatcgaacactccaccggcacgaaggagtacgtgctcgtcgac
gacgttgcgaccctggtgtggctcgcgcagacagcgagcctcgagttgcacaccccgcag
tggcgcttcgacgcggacggactcccctcgcaccccgaccggctcgtcctcgacctggac
cccggcgacgacatcgacctgcccacggtggccgaggtcgcgcgatgggcgcgcgagatc
ctcacggatgcgggcctcacgcccttcccggtcacgagcggcagcaagggcatccacctg
tactgtgcgctcccggccggccagacgagcgaggcggcgtccgcgctggcgaaggagctc
gcgcggtcgctcgaagcggatcaccccgacctcgtcgtcagcagcatgtcgagggccctg
cgtccagggaaggtcttcgtcgactggtcgcagaacaacggcaagaagacgaccatcgcg
ccgtactccctgcgcgggcgggcgcggccgacggtggcggcgccgcgcacctgggaggag
ctggacgaccccggcctcgcgcagctcgatctgacacaggtgctcacacgcgccgagacg
gacggcgatctcctcgcgccgctgcgcccccgacgcggtgccgccgacccgctgcgcacc
tacatctccaagcgatccgcagaccgcacgcccgagccggttccctcagaccccgccgcc
gacgcggcatccgggggcgcgctccgcttcgtcatccaggagcaccacgcccggcgcctg
cactacgacctccggctcgagcacgacggcgtctacgtgagctgggccgtgcccaagggt
gtgccggagacgacgaagcgcaatcacctcgcggtcatgaccgaagaccacccgctctcg
tacggcaccttcgagggcaagatccccgcaggggaatacggcgcgggcgaggtgacgatc
tgggacaccggcacctacgaggcggagaagtggcgaccggacgaggtcatcttcaccgtc
acggggcgggagggcggccccctgggtaccgtccggctcgctctcatccgcaccgacggc
gagggtgagagatcgacctggctcctgcaccggatgaaggacgaggcggtggcggccgca
tccgctgcgccatggccggacgagctctcgccgtctcgcctgcgcccgatgctcgccgag
aactccacatccggcctggcggcagccgctacccgacgatggggcgagccgtgggcggag
atgaagtgggacggcgtgcgcgccctcgcgttctgggacggcgagcggatgctgctgcgc
gcccgcagcggaaccgacatcaccgaccgataccccgaactcaccgcggaccccggcctc
gggcgcgccgcctgcatcctcgacggggagatcgtcgccctggatgagcgcggacggccc
agcttcccggtgctgcagtcccgcatgcacctcacgaaggcgggggagatccggcgcgag
gcggaacgcgtccccgtgcacctgcacgtgttcgacgtgctcgcgctcgacggagaggac
ctcaccgccctcccgctgcgcgagcgccgcacgcacctcgatggcctggcccgtgatctg
aatcccccgtggatcgtgccaccggtgttcgacgacctggatgcggcgctggaggccagc
accgcgttctccctcgagggcgtcatggtgaagaacccggcgtccgtgtaccggccgggg
cggcgcagcgaccagtggctgaagatcaagcacgtcgccgcgcaggaggtggtgatcggc
gcgatccggcccggtcgccacggccgcggcggcatcgggtcgctgctgatgggcgtgcct
tcgcccgaggggctgcgctatgtgggccgagtgggaacgggcttcagcgagcgggagctg
cgccgactcgacgaggtgctgcagccgttgcggaccgacgcttccccgttcctcgacgtg
ccgcgtgccgacgcctcggacgccctgtgggtgcgcccggaggtcgtcgccgaggtcggc
tacgccgaggtcacgcccgacggcaggctgcgccaggcgcgctggcgtggtctccgtccc
gacaagggccccgacgaggtgcgcgacgaggcgtga
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