Microbacterium sp. RG1: EHF32_12125
Help
Entry
EHF32_12125 CDS
T10164
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
mice Microbacterium sp. RG1
Brite
KEGG Orthology (KO) [BR:
mice00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mice03016
]
EHF32_12125
Enzymes [BR:
mice01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
EHF32_12125
Transfer RNA biogenesis [BR:
mice03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
EHF32_12125
Prokaryotic type
tRNA splicing ligases
EHF32_12125
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QCQ17414
LinkDB
All DBs
Position
2496417..2497586
Genome browser
AA seq
389 aa
AA seq
DB search
MEKLSARLVSWASLIDDKTLDQARTSSRMPFIHPHIALMPDAHLGKGATVGSVIPTLGAI
MPAAVGVDIGCGMIAVRTQFGLSQLADRDLAPLREAMERAIPLSAGHDNRKVVATAAPRI
AELEEKAAASGFDPASYVGHWRLQLGSLGSGNHFIEISVDELDRVWMFLHSGSRGIGNKI
ATHHIAVAQRLAKQWWIDLPDPDLAYLVEGTPEFARYIRELQWAQHFALLNREEMMDRVA
RQLGEFLGEDVVEHERINCHHNFTQPERHFGKEVWVSRKGAIQADAGRLGLIPGSMGTAS
YVVEGLGNPVSLNSSPHGAGREYSRSAARRTFSHDQLREAMVGIEFRDTDAFVDEIPQAY
KPIDRVMTDAEELVSIRHSLRQLVNVKGD
NT seq
1170 nt
NT seq
+upstream
nt +downstream
nt
atggagaagctctccgcacggctcgtgtcgtgggcgagcctgatcgacgacaagaccctc
gatcaggcgcgcacctcgtcacggatgccgttcatccacccgcacatcgcgctgatgccc
gacgcgcacctgggcaagggcgcgaccgtcggctcggtcatcccgacgctcggcgcgatc
atgccggcggccgtcggtgtcgacatcggatgcgggatgatcgccgtccgcacccagttc
gggctctcgcagctcgccgaccgcgacctcgcgccgcttcgcgaggcgatggagcgggcg
atccccctctcggccggccacgacaaccgcaaggtcgtcgccaccgccgcgccgcggatc
gcggagctcgaggagaaagctgccgcatccggcttcgacccggcctcgtacgtcggccac
tggcgactccagctcggatcgctcgggtcgggcaaccacttcatcgagatctcggtcgac
gagctcgaccgcgtctggatgttcctgcactcgggctcgcgcggcatcggcaacaagatc
gccacgcaccacatcgcggtcgcgcagcggctggcgaagcagtggtggatcgacctgccc
gaccccgacctcgcctacctggtggagggcacgcccgagttcgcgcggtacatccgcgag
ctgcagtgggcgcagcacttcgctctgctgaaccgcgaggagatgatggaccgcgtcgcg
cgccagctcggcgagttcctcggcgaggacgtcgtcgagcacgagcggatcaactgccac
cacaacttcacgcagcccgagcgccatttcggtaaagaggtgtgggtgtcgcgcaagggt
gcgatccaggcggatgcgggccggctcggcctcatccccgggtcgatgggcacggcgtcg
tacgtcgtcgaagggctcggcaacccggtctcgctcaactcgtcgccccacggcgccggt
cgcgagtactcccgttccgccgcgcgccgcacgttctcgcacgaccagctgcgggaggcg
atggtcggcatcgagttccgtgacacggacgccttcgtcgacgagatcccgcaggcctac
aagccgatcgaccgggtgatgacggatgcggaggagctcgtgtcgatccggcactcgctg
cgccagctcgtcaacgtgaagggcgactga
DBGET
integrated database retrieval system
