Micromonospora sp. FIMYZ51: QQG74_16975
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Entry
QQG74_16975 CDS
T10361
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
micf Micromonospora sp. FIMYZ51
Brite
KEGG Orthology (KO) [BR:
micf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
micf03016
]
QQG74_16975
Enzymes [BR:
micf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
QQG74_16975
Transfer RNA biogenesis [BR:
micf03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
QQG74_16975
Prokaryotic type
tRNA splicing ligases
QQG74_16975
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
WZH93207
LinkDB
All DBs
Position
complement(3729416..3730834)
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AA seq
472 aa
AA seq
DB search
MELVEESPYRFRIDRRDPMRVPGVVFASRSLLPDPAADRSLEQVANVATLPGIVDASYAM
PDVHLGYGFPIGGVAATDVEAGGVVSPGGVGFDISCGVRLLAADLDRDELRPRLGAVMDA
LGAATPRGMGRGAVWHLTGRDELDAVLRGGSRYAVQRGFGVARDLHRCEDFGAVDDADPA
QVSDRAIERGARQVGSLGSGNHFLEVQAVEQVYDEPVAAAFGLRTGQVCVMIHCGSRGLG
HQICTDHVRAMEKVMGRHDIHVPDRQLACAPVDSAAGRAYLGAMAAAANYARANRQLLAH
AASEVFTRATGCRLDLVYDISHNLAKIEKHPVDGGVRRLCVHRKGATRALPPGHPDLPDE
LRPVGQPVLIPGSMGTGSYVLTGVAGAPAWASTCHGAGRVQSRKQAVAAGRGGDPRAQLE
AQDIAVRGASRRGLAEEMPAAYKDISAVVEAAEGAGLCRKVARLVPLGVVKG
NT seq
1419 nt
NT seq
+upstream
nt +downstream
nt
atggagttggtcgaggagtcgccgtaccggttccggatcgaccggcgcgacccgatgcgg
gtgcccggggtggtcttcgcgtcccggtcgctgctgcccgatccggcggccgaccggtcg
ctggagcaggtcgccaacgtcgccaccctgcccggcatcgtcgacgcctcgtacgccatg
ccggacgtgcacctggggtacggcttcccgatcggtggggtggccgccacggacgtcgag
gccggcggggtggtctcgcccggcggcgtcggcttcgacatctcctgcggggtgcggctg
ctcgccgccgacctggaccgtgacgagctgcgcccacggctgggcgcggtgatggacgcg
ctcggtgcggccactccgcgtggcatgggtcggggcgcggtgtggcacctgaccggccgc
gacgaactcgacgcggtgctgcgcggcggttcccggtacgcggtgcagcgcggcttcggc
gtggcgcgcgacctgcaccgctgtgaggacttcggcgcggtggacgacgccgatccggcc
caggtcagcgatcgggcgatcgagcgcggcgcacgccaggtcggcagcctcggctccggc
aaccacttcctcgaggtccaggcggtcgagcaggtgtacgacgagccggtggcggcggcg
ttcgggctgcgcaccgggcaggtctgcgtgatgatccactgcggttcgcgcggtctcggt
caccagatctgcaccgaccacgtccgggcgatggagaaggtgatgggccgccacgacatc
cacgtcccggatcggcaactcgcctgcgccccggtcgactccgcagcgggtcgggcctac
ctgggggcgatggccgccgcggcgaactacgcacgggccaaccgacagctgctcgcccat
gcggcgagcgaggtgttcacgcgggcgaccggctgccgactcgacctcgtctacgacatc
tcgcacaatctcgccaagatcgaaaagcacccggtcgacggcggtgtgcggcggttgtgc
gtacaccgcaagggtgccacccgggcgctgccgcccggccacccggatctgcccgacgag
ctgcggcccgtcggccagccggtgctcatcccgggctcgatgggcaccggctcgtacgtg
ctcaccggggtggccggtgcgccggcctgggcctccacctgtcacggcgcgggccgggtg
cagagccgcaagcaggccgtcgcggccgggcgcggtggcgacccgcgcgcccaactggag
gcgcaggacatcgcggtacgcggtgcctcgcggcgcggtctggccgaggagatgccggcg
gcgtacaaggacatctcggccgtggtcgaggccgccgagggtgccgggttgtgccggaag
gtggcccggctggtgccgctcggcgtggtcaagggctga
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