Microlunatus sp. Gsoil 973: GJV80_09395
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Entry
GJV80_09395 CDS
T06297
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
micg
Microlunatus sp. Gsoil 973
Brite
KEGG Orthology (KO) [BR:
micg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
micg03019
]
GJV80_09395 (hrpA)
Enzymes [BR:
micg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
GJV80_09395 (hrpA)
Messenger RNA biogenesis [BR:
micg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
GJV80_09395 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
HA2_C
Helicase_C
OB_NTP_bind
DEAD
AAA_22
AAA_19
T2SSE
NACHT
nSTAND3
AAA_23
AAA_30
HA2_N
Cas3-like_C_2
SLFN-g3_helicase
Inhibitor_I36
ABC_tran
UvrD-helicase
AAA_16
SRP54
Motif
Other DBs
NCBI-ProteinID:
QGN32993
UniProt:
A0A6I5VKT2
LinkDB
All DBs
Position
complement(2003279..2007169)
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AA seq
1296 aa
AA seq
DB search
MSTSALAEPKISFDPALPISARADEIETAIRHHQVVVVAGETGSGKTTQLPKICLRLGRR
SIGHTQPRRIAARTVAERIAEELDVPLGELVGYQVRFTRKAGRDTRLKVMTDGVLLAEIG
HDRELRKYDTIIIDEAHERSLNIDFLLGYLKQLLPRRPELKVIITSATIDTLRFAEHFTD
RNGHPAPIVEVSGRTYPVETRYRPLVGQAGEGAGTAQAEDLDQVDGIVRAARELMAEGDG
DILVFLSGEREIRDAADALHQAQVAGAREFRFTEVLPLYARLSAAEQHKVFQSHTGRRIV
LATNVAETSLTVPGIRYVIDTGTARISRYSARTKVQRLPIEPISQASANQRAGRCGRLGP
GICIRLFAEEDFAGRPEFTEPEILRTNLASVILQMAAADLGDIASFPFVEAPDSAQITEG
LRVLDELGAIKPRRATDRSPRLTRIGQRLAGIPIDPRMGRMLLAGERQGCLREMLIIVSG
LSVQDPRERPADKQQQADQLHRRFWAPIATDDDQEPEPDGSDFIAILRLWRYLRQQQKAL
SGNAFRRMCRDEFLHFLRIREWQDLHAQLRQITRELGLGLNDEPADHGRIHTAILTGLLS
HVGLAEVMEDRRRPNQSGRQGRRGRRELQEYLGARNTRFAINPGSSVARTTPPLVMAAEI
VETTRLWARTVAGIEARQIEEVGGHLLKHSYSEPHWSARSGSVMAYEQVSLYGVPIIGRR
RVAYGKINPAEAREIFIRSALVEGDWKTRQRFFAENQKVRAEAEELEDRTRRRDLLVDDQ
VIFDFYNARIPADVTSAAHFDKWWKDARQKDPDRLTLTLDDLVVDPDAARIDEFPDVWTS
GDVSFEIGYSFQPGTARDGVSIEIPVGLLNRVSEADFSWQVPGLRTELATELIRSLSKSV
RRAFVPAPEHAQRALAWLDDHRGPTGESFTSALGRALTALTGVPVPADAWLSSQPPAHLL
PTYLITDRGRVLGEGKDLDELRQWLAPQVSRTLNRAAATVTVTGATDWTFGELADRIETA
AAAGHSLVSFPGLADEQTSVGVKVYESAELRDHYHPLGLRRLVMINIPDPTKWVVAHLGN
QAKLALGGSPYPGVPALLADARLASVGELIRRHDHDGAGSRTRDQRAFRGLCDLVRADHA
DRMRSLVNETAVALELWSQANAQLDVVRGVDDLAAADLREQLDNLIFPGFLAVTDGERLP
DLGRYLRAALNRITVLRANPARDSAGLATVTRVEDAYAELVAALPDGPLPPDVDAIGWML
EELRVSLFAQQLRTRMPVSEKRVMTAIAEARRSHGL
NT seq
3891 nt
NT seq
+upstream
nt +downstream
nt
atgtccacgtccgccctggccgagccgaagatcagtttcgatccggcgctcccgatctcc
gccagggccgatgagatcgagacggcgatccggcaccaccaagtggtcgtcgtcgccggc
gagaccggctcgggcaagacgacccagctgcccaagatctgccttcggctcggccggcgc
tcgatcggccacacccagccacgccggatcgccgcccggaccgtcgccgaacggatagcc
gaggagctcgacgttccgctcggtgagctggtcggctaccaggtccgattcacccgcaag
gccggtcgggacacccggctgaaggtgatgaccgacggcgtcctgctggccgagatcggc
catgatcgcgagttgcgcaagtacgacacgatcatcatcgacgaggctcacgagcgcagc
ctgaacatcgacttcctcctcggctacctgaagcaattgctgcccaggcgtccggaactg
aaggtgatcatcacctccgcgacgatcgacaccctgcgtttcgcggagcacttcaccgac
cgcaacggacacccggcacccatcgtcgaggtctccggccgcacctatcccgtggagacc
cgttaccgaccactggtcggacaggccggcgagggtgccggcaccgcccaggccgaggat
ctggaccaggtcgacggaatcgtccgcgcggcacgcgagctgatggccgagggggacggc
gacatcctggtcttcctctccggcgaacgggagatccgcgacgccgccgacgccctgcac
caggcccaggtcgccggtgcgcgggagttccgcttcaccgaggtgttgccgctgtatgcc
cggctatcggccgccgaacaacacaaggtcttccagtcacacaccggccgacgcatcgtg
ctggcgaccaacgtcgccgagacctcactgaccgttcccggcatccggtacgtgatcgac
accggcaccgcgcggatctcccgctattcggcgcgcaccaaggtgcagcggctgccgatc
gagccgatctcccaggcttcggccaatcagcgcgccggtcgctgcggccgtctcggcccc
ggcatctgcatccggttgttcgccgaggaggacttcgccggccgtccggagttcaccgaa
ccggagatcctgcggaccaacctcgcgtcggtcatcctgcagatggccgcagcagacctc
ggcgacatcgcctcgttcccgttcgtcgaggcaccggattcggcgcagatcaccgaaggt
ctgcgggtgctggacgaactcggcgcgatcaaaccccgacgggcgacggaccggtctccg
cggctgacccggatcgggcaacgactggccggaataccgatcgatccgcggatgggccgg
atgttgctcgccggcgagcggcagggctgcctgcgggagatgttgatcatcgtttccggg
ttgtcggtgcaggacccgcgggaacgcccggccgacaagcaacagcaggccgatcagctg
caccgccgcttctgggcgcctatcgccaccgacgatgatcaggaacccgagcccgacggc
agcgacttcatcgccatcctgcggttgtggcgctatctgcggcagcagcagaaggcgctc
agcgggaacgcgttccggcggatgtgccgggacgagttcctgcacttcctgcggatccgc
gaatggcaggacctgcatgcccaactgcggcagatcacccgcgaactcggcctcggcctg
aacgacgagccggccgaccatggtcggatccacaccgcgatcctgaccggcctgctgtcc
catgtcgggctggccgaggtgatggaggaccggaggcggccgaaccagtccggacggcag
ggtcgacgcggtcggcgggagctccaggagtatctcggggcgcggaacaccaggttcgcg
atcaatcccggcagcagcgtcgcccggacgacgccgccgctggtgatggctgccgagatc
gtcgagacgacgcggctctgggcgcgcaccgtggcggggatcgaggcccggcagatcgaa
gaggtcggcggacacctgctcaagcacagctactccgaaccgcactggtcggcacgcagc
ggttcggtgatggcgtacgagcaggtcagcctgtacggcgtgccgatcatcggccggcgg
cgggtcgcgtacgggaagatcaatcccgccgaggccagggagatcttcatccggtcggcg
ctggtcgagggtgactggaagacccggcagcgattcttcgctgagaaccagaaggtccgt
gccgaggccgaggaactggaggaccgcacccgtcgtcgggatctgctggtcgacgaccag
gtgatcttcgacttctacaacgccaggatcccggcggatgtcacctccgcggcacacttc
gacaagtggtggaaggacgcccgacagaaggatccggaccggctgacgctgactctggat
gatcttgtcgtcgacccggatgcggcgcggatcgacgagttccccgatgtctggacctcc
ggcgacgtgtccttcgagatcggctacagcttccagccgggaacggcccgggacggggtg
agcatcgagattccggtcgggctgttgaaccgggtctccgaggccgacttcagctggcag
gtccccggcctgcgcaccgaactggccaccgaactcatccggtcgttgtcgaaatcggtc
cgtcgcgcgttcgtccctgctcccgaacacgctcagcgtgccctggcctggcttgatgat
caccggggtccgacaggggagtcgttcacctcggcgcttggccgggccctgaccgcactc
accggagtgcccgtgccggccgatgcctggctgtccagccaacctcctgcccacctgctg
ccgacctatctgatcaccgaccgcggacgggttctgggtgagggcaaggatctggacgaa
ctgcgccagtggctggcaccgcaggtcagcagaaccctcaacagggctgcggcgaccgtc
accgtgaccggcgccaccgactggaccttcggtgagctcgccgaccgcatcgagacagcc
gcggctgccggtcacagcctggtcagctttcccggcctcgccgacgagcagaccagcgtc
ggcgtcaaggtgtacgaatccgccgagttgcgtgatcactaccatccactcggtctgcgt
cggctggtgatgatcaacatccctgatccgacgaagtgggttgtggcccatctgggcaac
caggccaagctcgcactgggcggcagcccgtatccgggcgtgcccgctctgctggcagac
gcccgcctggcatcagtgggtgagctgatccggcggcacgatcatgacggggccggcagc
cggacccgtgatcaacgagccttccgcggactgtgtgatcttgtccgcgccgaccatgcc
gatcggatgcgttcgctggtcaacgagaccgcggtagcacttgagttgtggagccaggcc
aacgcccaactggatgttgtgcgtggtgtggacgatcttgccgcggccgacctgagggag
cagctggacaacctgatctttccgggattccttgccgtgaccgacggtgaacggctgccc
gacctcggccgctacctgcgtgcggcgctgaaccggatcaccgtgctgcgcgccaatcct
gcccgggacagcgctgggcttgccaccgtcacccgggtggaggatgcgtacgccgaactg
gttgcggcactgcccgacggcccgttgccgcccgacgtcgatgcgatcggctggatgctg
gaggagctgcgggtgagcctgttcgcccagcagttgcggacccggatgccggtctcggaa
aagcgggtgatgacggcaatcgccgaggcccgacgcagtcacggcctctga
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