Microlunatus sp. Gsoil 973: GJV80_12835
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Entry
GJV80_12835 CDS
T06297
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
micg
Microlunatus sp. Gsoil 973
Pathway
micg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
micg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GJV80_12835 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
micg03400
]
GJV80_12835 (mfd)
Enzymes [BR:
micg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GJV80_12835 (mfd)
DNA repair and recombination proteins [BR:
micg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
GJV80_12835 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
CarD_TRCF_RID
Helicase_C
Cas3-like_C_2
ResIII
MFD_D3
RecG_dom3_C
DUF4404
Motif
Other DBs
NCBI-ProteinID:
QGN33551
UniProt:
A0A6I5VIR9
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All DBs
Position
complement(2721968..2725576)
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AA seq
1202 aa
AA seq
DB search
MTLAGLIDLILQEPTISETVGDARSHTVNALDLTMPPPMRPLFAASLAARAERGGADTTV
LLVTSTYREAEDVTETLQCLLGPEEVAYYPAWETLPHERLSPRSDTVGRRLSVLRRLVHP
EDFGDTRLKVVVAPIRSVLQPQVKGLADLKPVHLRKGEDFDIGDLAQALVDAAYVRVDLV
ERRGEFAVRGGIVDIFPPTEEHPVRIDFFGDTVDEIRYFAVADQRSSDEVIEEVTASPCR
ELLLTDQVKQRAAQLMDDHPELSEMLERIAQGHAVEGMESLSPALVDGMELLIDLLPVGT
HILVADPELVRTRSADLVKTSEEFLGASWAAAAGGGKAPIDLGSSAYRPLGEIREHAIDR
GLAWWTLSPFSAGPESSDRSALSGPIRTEEGEIIDFSSAVSTSGVESRTVSARVPESRPG
DAEKSITEIGDHARDGWRVVLVAEGKGTAQRMVQMLGEADIPAKLIEELTAQPEPQVVTV
STGELRTGLLIDKIKLAVYTTGDLSGQHQVDRSERRMPARRKRQIDPLELQPGDPIVHEQ
HGVGRYIEMVQREVAGSTREYLVVEYAPSKRGQPGDRLYVPMDQLDLVTRYVGGESPTLD
RMGGSDWTKRKGRARKAVREIAAELIKLYAARQASRGYAFSTDTTWQRELEDAFNYVETP
DQLACIDEVKRDMEQIVPMDRLICGDVGYGKTEIAVRAAFKAVMDGKQVALLVPTTLLVQ
QHYNTFADRYAGFPVKVGALSRFSSDAEAKATVEGLADGSIDVVVGTHRLISDKIKFSDL
GLVIIDEEQRFGVEHKESLKKLRMDVDVLAMSATPIPRTLEMAVTGIREMSTITTPPEER
HPVLTFAGPYDEAQVTAAIRRELLREGQVFYVHNRVQSIEKVARRIRELVPEARVVTAHG
QMGEQRLEQVMVDFWERRADVLVSTTIVEAGLDISSANTLLVERADVLGLSQLHQLRGRV
GRGRERGYAYFLYPPEKPLTETAHDRLATIAAHADLGAGMAVAMKDLEIRGAGNLLGGEQ
SGHIADVGFDLYVRLVGEAVAEYRGDSGEPEPEVKIELPIDAHLPTDYVESERLRLEMYK
RIAEVRSSEDIEAVRAELSDRYGTPGPEVENLLSVAAFRILARKAGLTDVVNQGNFIRFS
PVALPESKQLRLKRLYPGSVIKEKAGLVLVPRPRPAQIGGPQIKDAELLLWCTEVINSVL
LP
NT seq
3609 nt
NT seq
+upstream
nt +downstream
nt
gtgacccttgcgggactcattgatctcattctccaagaacccaccatctccgagaccgtc
ggtgatgcgcgctcgcataccgtcaacgcgctcgatctgaccatgccgccgccgatgcgg
ccgctgttcgccgcatcgctggccgcccgggccgaacggggcggcgccgacacgacggtg
ctgctggtcacctcgacctaccgcgaggccgaggacgtcaccgagacgctgcaatgcctg
cttggccccgaggaagtcgcctactacccggcctgggagaccctgccgcacgagcgcctc
agtccccgctccgacaccgtcggccgtcggctgtcggtgctgcgccggctggtgcacccc
gaggacttcggcgacacccggctcaaggtggtcgtggctccgatccggagcgttctccag
ccgcaggtcaagggcctggcagatctcaagccggtccacctgcgcaagggggaggacttc
gacatcggcgaccttgcccaggcactggtcgacgccgcctatgtccgggtcgatctggtg
gagcggcgcggcgagttcgccgtccgcggcggcatcgtcgacatcttccctccgaccgag
gaacaccccgtccggatcgacttcttcggcgacaccgtcgacgagatccgttacttcgcc
gtcgcggaccagcgatcctccgacgaggtgatcgaggaggtcaccgcgtcgccgtgccgg
gaactgctgctcaccgatcaggtcaagcaacgtgccgcgcagttgatggatgatcatccc
gaactgtcggagatgctcgagcgtatcgcccagggtcacgcggtcgagggcatggaatcg
ctgtcgccggccctggtcgacggcatggagctgctcatcgatctgctgccggtcggcact
cacatcctggttgccgacccggagttggtacgcacccggtccgccgatctggtcaagacc
agtgaggagttcctcggcgcatcctgggcggcggccgcaggcggcggtaaggcaccgatc
gatctcggttcgtcggcctaccggccactcggtgagatccgcgagcatgccatcgatcgc
gggttggcctggtggacgctttccccgttcagcgcaggcccggagtcatcggaccgctcc
gcgctgtccgggccgatccgtaccgaagagggcgagatcatcgacttctcgtcggcggtg
agcaccagcggcgtcgaatcccgtaccgtctcggcccgggtcccggaatcgcgcccgggc
gacgcggagaagtcgatcaccgagatcggtgatcatgcccgcgacggttggcgcgtcgtg
ctcgtcgccgagggcaagggcaccgcacagcggatggtgcagatgctcggtgaggccgac
atcccggccaagctgatcgaggagctgaccgcccagcccgaaccgcaggtcgtgaccgtg
agcaccggcgagctgcgtaccggtctgctgatcgacaagatcaaactggccgtctacacc
accggtgatctttccggtcagcaccaggtggaccgatccgagcgcaggatgccggcccgc
cgcaagcggcagatcgacccgttggagctgcagcccggcgacccgatcgtgcacgaacaa
cacggtgtcggccgctacatcgagatggtgcagcgtgaggtcgccggatcgacccgggaa
tatctggtcgtcgagtacgcaccgagcaagcgcggccagcccggtgatcggctgtatgtg
ccgatggaccaactggatctggtcacccgttacgtcggcggcgagtcgccgacgctggac
cggatgggcggctcggactggaccaagcgcaagggtcgggcccgcaaggccgtccgcgag
atcgccgcggagttgatcaagctgtacgccgcccgccaggcaagcaggggttacgcgttc
tccaccgacaccacctggcagcgggagctcgaggacgccttcaactacgtcgaaacaccg
gaccagctggcctgcatcgacgaggtgaagcgggacatggaacagatcgtgccgatggac
cggctgatctgtggtgacgtcggctacggcaagaccgagatcgccgtacgggccgccttc
aaggctgtcatggacggcaagcaggtcgcgctgctcgtgccgaccaccctgctggtccaa
cagcactacaacaccttcgccgaccgctacgccggcttcccggtcaaggtcggcgcactc
agccggttctcctccgacgccgaggccaaggcaaccgtggaaggactggccgacgggtcg
atcgatgtcgtggtcggcacccaccggctgatcagcgacaagatcaaattctccgacctc
ggcctggtgatcatcgacgaggagcagcggttcggcgtcgagcacaaggaatcgttgaag
aagctgcggatggatgtcgacgtgctggcgatgtcggcgacaccgatcccgcgcaccctg
gagatggcggtgaccggcatccgggagatgtcgaccatcaccacgccgccggaggaacgg
catccggtgctcaccttcgccggtccgtacgacgaagcgcaggtgaccgctgcgatccgc
cgggaactgctccgtgagggtcaggtcttctatgtccacaaccgggtgcagtcgatcgag
aaggtcgcccggcggatccgcgagctggtaccggaggcccgggtggtcaccgcacacggc
cagatgggcgagcaacgcctggagcaggtgatggtcgacttctgggagcggcgtgccgat
gtcctggtcagcaccacgatcgtcgaagcgggcctggacatctcgtcggcgaacacactg
ctggtggaacgcgcggacgtactcggcctatcgcagctccaccagttgcgcggccgggtc
ggccgcggtcgtgagcgcggctatgcgtacttcctgtatccgccggagaaaccgctgacc
gagaccgctcatgatcgactggcgaccatcgccgcacatgctgatcttggtgccgggatg
gcggtcgcgatgaaggacctggagatccgcggcgcaggcaacctgttgggcggtgagcag
tccgggcacatcgccgacgtcggcttcgatctgtatgtccggctggtcggcgaggcggtc
gcggagtatcgcggcgacagcggtgagccggagccggaggtcaagatcgaactgccgatc
gacgcgcacctgccgaccgactacgtcgagtccgaacggctgcggctggagatgtacaag
cggatcgccgaggtgcgcagctccgaggacatcgaggcggtccgggccgaactcagcgac
cgctacggcacgccgggacccgaggtggagaacctgctgtcggtggctgcgttccggatc
ctggcccgtaaggccgggctcaccgacgtggtcaaccagggcaacttcatcaggttctcc
ccggtggcgttgcccgagtccaagcagttgcggctgaagcggctctacccgggcagcgtg
atcaaggagaaggccgggttggtgttggtcccgcggccgcgcccggcgcagatcggcggc
ccgcagatcaaggatgccgaactgctgctgtggtgcaccgaagtcatcaacagcgtgctg
ctcccctga
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