Micromonospora sp. HM134: FJK98_04725
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Entry
FJK98_04725 CDS
T06145
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mich
Micromonospora sp. HM134
Pathway
mich03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mich00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FJK98_04725 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mich03400
]
FJK98_04725 (mfd)
Enzymes [BR:
mich01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FJK98_04725 (mfd)
DNA repair and recombination proteins [BR:
mich03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FJK98_04725 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
UB2H
AAA_22
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QDY06565
UniProt:
A0A518WBF8
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All DBs
Position
968389..972042
Genome browser
AA seq
1217 aa
AA seq
DB search
MLTGLFSAALADPGLARARDLARSGAAQVDGLDLTAPAALRPFAVAAVAADEAVGGAGRP
VLAVTATSREADDLAAALGSLLPAGQVAVFPSWETLPHERLSPRSDTVGRRLAVLRRLAH
PDAPGPHTVRADADAGPLRVVVAPVRSLLQPQLKGLGDLEPVQLAAGEEVDLEQVARRLT
DLAYARVDLVTKRGEFAVRGGILDVFPPTDEHPSRVEFWGDEVEEIRTFAVADQRTIEGV
PQLWAPPCRELLLTPAVRRRAAALAGEHPELAEILDKLAEGIPVEGMESLAPALIGSDNL
ELLVDTMPVGTHVLLCDPERIRTRAHDLVRTSEEFLQASWAAAAVGGQAPVDLGAAAFKS
LAEVRAAARALRQPWWTLAPFGLVEADAAAPARQPWEDAPTGADVTPDDAIAVSLAAQPA
PLYHGETDRLVDDLKRWTGDGWSVSLVFEGHGPAQRAVEVLRDAGLGARLTEQVPAAPAP
GEVLVSCGCLTAGFVDEASRFVLLTGNDVTGGRGTTTRDMRRMPSRRRNTIDPLELKAGD
FVVHEQHGIGRYVELVQRTVNGASREYLVIEYAASKRGQPGDRLFVPTDQLDQLSRYVGG
EQPTLHKMGGSDWQKSKARARKAVREIAAQLIQLYAARKASKGHAFAPDSPWQRELEDAF
PWQETPDQMAAIEEVKRDMEQTVPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVP
TTLLVQQHYNTFAERMNQFPVTIRQLSRFQTAKESERTLEMVADGTVDIVIGTHRLLQTA
TRFKSLGMVIIDEEQRFGVEHKEHLKTLRASVDVLSMSATPIPRTLEMAITGIREMSTIA
TPPEERHPVLTFVGSYDDRQVAASIHRELLRDGQVFYLHNRVESIDRTARKLRELVPEAR
VAVAHGQMGEEALEKVMVGFWEKEFDVLVCTTIVESGIDIPNANTLIVERADLLGLAQLH
QIRGRVGRGRERAYAYFLYPPEKPLTEHAHERLATIAQHTELGAGMYVAMKDLEIRGAGN
LLGGEQSGHIEGVGFDLYVRMVGEAVSAFKGERTEEETDVKIDLPIDAHLPHDYVGVERL
RLEMYRKLAEARDDARLREVVAEMTDRYGEPPAPVQNLVAVARFRLLARRYGLTDVSMQG
KHLRFGPLPLPDSKQLRLKRYHPDSVYKQATDQVSVPRPSTRRVGGEPLRDQALLEWCAQ
LLADVLGEPAALAGARG
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
atgctcaccggactcttctccgccgccctggccgatcccgggctggcccgcgcgcgtgac
ctggcgcgctccggtgccgcccaggtcgacgggctcgacctcaccgccccggcggcgctg
cgcccgttcgccgtggccgccgtcgccgccgacgaggcggtcggcggggccggccggccc
gtgctggcggtcaccgccaccagccgggaggccgacgacctggccgccgcgctgggcagc
ctgctcccggccgggcaggtcgcggtcttcccgtcctgggagacgctgccgcacgagcgg
ctctcgccccgttccgacaccgtcggccgccggctggccgtgctgcgccgcctcgcccac
ccggacgcgccgggcccgcacaccgtccgcgccgacgccgacgccggcccgctgcgggtg
gtggtggcgcccgtccggtcgctgctgcaaccgcagctcaagggcctcggcgacctggag
ccggtgcagctcgccgccggtgaggaggtcgacctggagcaggtcgcccgccggctcacc
gacctggcgtacgcccgggtcgacctggtcaccaagcgcggcgagttcgcggtacgcggc
ggcatcctggacgtcttcccgcccaccgacgagcacccgtcccgggtcgagttctggggc
gacgaggtggaggagatccgcaccttcgccgtcgccgaccagcgcaccatcgagggcgta
ccgcagctctgggccccgccgtgccgggagctgctgctgaccccggcggtgcgccggcgg
gccgccgcgctcgccggggagcacccggagttggccgagatcctcgacaagctggccgag
ggcatcccggtcgaggggatggagtcgctggccccggcgctgatcggcagcgacaacctg
gaactgctggtggacaccatgcccgtcggcacccacgtgctgctctgcgacccggagcgg
atccgcacccgggcgcacgacctggtgcgtacctcggaggagttcctccaggcgagctgg
gccgcggccgccgtcggcggccaggccccggtcgacctcggcgccgccgccttcaagtcc
ctggccgaggtacgcgccgccgcccgcgccctgcgccagccctggtggaccctcgccccg
ttcgggctggtcgaggcggacgccgccgcaccggcccgacagccctgggaggacgcgccg
accggggcggacgtcacccccgacgacgcgatcgcggtgagcctggccgcccagccggcc
ccgctctaccacggcgagaccgaccggttggtcgacgacctgaagcgctggaccggcgac
ggctggtcggtgtcgctggtcttcgaggggcacggtcccgcccagcgggccgtcgaggtg
ctccgcgacgccgggttgggtgcccggctcaccgagcaggtgccggccgcgcccgccccc
ggcgaggtgctggtctcctgcggctgcctcaccgccggcttcgtcgacgaggcgtcgagg
ttcgtgctgctcaccggcaacgacgtcaccggcggccggggcaccaccacccgggacatg
cgccggatgccgagccggcggcgcaacaccatcgacccgctggagctgaaggccggcgac
ttcgtcgtgcacgagcagcacggcatcggccggtacgtcgagctggtgcagcgcaccgtc
aacggcgcgtcccgggaatacctcgtcatcgagtacgcggccagcaagcgcggccagccc
ggcgaccggctgttcgtccccaccgaccagctcgaccagctctcccgctacgtcggcggc
gagcagcccaccctgcacaagatgggcggctcggactggcagaagtccaaggcccgcgcc
cgcaaggcggtccgggagatcgccgcccagctcatccagctctacgccgcccgcaaggcg
tccaaggggcacgcgttcgccccggactccccgtggcagcgggagctggaggacgccttc
ccgtggcaggagacgcccgaccagatggccgccatcgaggaggtcaagcgggacatggag
cagaccgtcccgatggaccggctgatctgcggcgacgtcgggtacggcaagaccgagatc
gccgtccgggcggcgttcaaggcggtgcaggacggcaagcaggtggcggtgctggtgccg
acgacgctgctggtgcagcagcactacaacacgttcgccgagcggatgaaccagttcccg
gtgaccatccgccagctctcccggttccagaccgccaaggagagcgaacggacgctggag
atggtcgccgacggcaccgtcgacatcgtcatcggcacccaccggctgctccagacggcc
acccggttcaagtccctcggcatggtgatcatcgacgaggagcagcggttcggcgtcgag
cacaaggaacacctcaagacgctgcgcgcctcggtcgacgtgctgagcatgtcggccacc
ccgatcccgaggacgctggagatggcgatcaccggcatccgggagatgtcgaccatcgcc
accccgccggaggagcggcacccggtactgaccttcgtcgggtcgtacgacgaccggcag
gtggccgcgtcgatccaccgtgagctgctccgcgacgggcaggtcttctacctgcacaac
cgggtcgagtcgatcgaccggacggcgcgcaaactgcgcgagctggtgcccgaggcgcgg
gtggcggtggcccacgggcagatgggcgaggaggccctggagaaggtgatggtcggcttc
tgggagaaggagttcgacgtcctggtctgcaccaccatcgtcgagtccggcatcgacatc
ccgaacgccaacacgctgatcgtggagcgggccgacctgctcggcctggcccagctgcac
cagatccggggccgggtgggccggggccgggagcgggcgtacgcgtacttcctctacccg
ccggagaagccgcttaccgagcacgcgcacgagcggctggccaccatcgcgcagcacacc
gagctgggcgcgggcatgtacgtggcgatgaaggacctggagatccggggcgccggcaac
ctgctcggcggcgaacagtccgggcacatcgagggcgtcgggttcgacctgtacgtccgg
atggtcggcgaggcggtgtcggcgttcaagggggagaggaccgaggaggagaccgacgtc
aagatcgacctcccgatcgacgcgcacctgccgcacgactacgtcggggtggaacggctg
cggctggagatgtaccgcaagctcgccgaggcgcgcgacgacgcgcggctgcgcgaggtg
gtggccgagatgaccgaccggtacggcgaaccgcccgccccggtgcagaacctggtcgcg
gtggcccggttccggctgctggcccgccgctacggcctgaccgacgtgtcgatgcagggc
aagcacctccggttcgggccgctgccgctgcccgactcgaagcagttgcggctcaagcgc
taccacccggactcggtctacaagcaggccaccgaccaggtcagcgtgccccggccgagc
acccgccgggtcggcggcgagccgctgcgcgaccaggcgctgctggagtggtgcgcccaa
ctcctcgccgacgtcctcggcgaaccggccgcgctggcgggggcgcggggatga
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