Micromonospora sp. HM134: FJK98_10050
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Entry
FJK98_10050 CDS
T06145
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
mich
Micromonospora sp. HM134
Brite
KEGG Orthology (KO) [BR:
mich00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mich03019
]
FJK98_10050 (hrpA)
Enzymes [BR:
mich01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
FJK98_10050 (hrpA)
Messenger RNA biogenesis [BR:
mich03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
FJK98_10050 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
T2SSE
nSTAND3
NACHT
DUF2968
SLFN-g3_helicase
PhoH
AAA_16
Motif
Other DBs
NCBI-ProteinID:
QDY07476
UniProt:
A0A518WE31
LinkDB
All DBs
Position
complement(2256433..2260488)
Genome browser
AA seq
1351 aa
AA seq
DB search
MQNPAASGPAAPADAPTARELHRRLTPLMFRDQRRLQRRLDGVRKLRDPQRRDEALAEIA
GEVSRAEGRLATRRAAVPTITYPAQLPVSERRDDIAAAIRDHQVVIVAGETGSGKTTQLP
KICLELGRGITGLIGHTQPRRLAARTVADRIAEELGTELGDVVGYKVRFTDQVSDRSLVK
LMTDGILLAELQTDRMLRQYDTLIIDEAHERSLNIDFILGYLRQLLPRRPDLKVVITSAT
IETDRFAQHFADADGRPAPVVEVSGRTYPVEVRYRPLVEVTEGDDDGADDEENVRDQIQA
IGDAVQELAAEGPGDILVFLSGEREIRDTAEALGKLTQSKRALLGTEILPLYARLSAAEQ
HRVFAPHPGRRVVLATNVAETSLTVPGIKYVVDPGSARISRYSSRLKVQRLPIEPVSQAS
ANQRKGRCGRTSDGICIRLYDEQDFASRPEFTDPEILRTNLASVILQMTAIGLGDLAAFP
FIDPPDRRNITDGVNLLHELGALDPTETDPAKRLTPLGRRLAQLPVDPRLARMVIEGERN
GCATEVLVIAAALSIQDPRERPAEKQAQADQAHARFTDRESDFVSLLNLWRYLREQQREL
SSSAFRRMCRAEYLNYLRVREWQDIVAQLRQVLRTPEQGDGRRGRRGAAQPPADGGRRGV
AADLPEEIDTPKVHQSLLPGLLSHIGLKDAQKHEYLGARGAKFAVFPGSALFKKPPRWVM
AAELVETSRLWGRVAGRVEPEWVEPLAQHLVKRSYSEPHWEKKQAAVMAYEKVTLYGVPL
VSSRKVNFGRIDPALSRELFIRHALVEGDWQTHHQFWRDNEKLRTEVEELENRARRRDIL
VDDESIFAFYDQRVPADVVSGRHFDAWWKVARRQQPDLLTFTRELLVNAGRGGVDEADFP
DEWRADGVTLPLTYTFDPTAPTDGVTVDIPLPLLNQVPAESFDWQVPGLREELVIALIRT
LPKAVRRNFVPVPDHARAALAAITPGEEPLLDALTRQLRRMTGVTVPREAWEPAKLPPHL
RVTFRVIGDADKPVAEGKDLPALQRQLRQEVRQVVAAAAPEVTRTGLTGWTIGTLPRTIE
QVRAGYAVTAYPALVDEGTTVGVKVFDSEAEQAAAHWAGTRRLLRLTVPSPAQFLQGRLS
NEAKLALSRNPHGGVQQLIADAAGAAIDKLIADAGGPAWDADGFAALRDRVRADLVDTVV
EVMGRVRQVLAAAYAVEQRLGATRNLAVVAALADLRQQLTGLVHDGFVTEAGYARLPDLL
RYLTAMERRLDRLTANPQRDKQQQDRIATVQQEYRDMVAALPPARRASAPVRQIRWMIEE
LRVNVFAQALGTPYPVSEQRIYRAMDDAEGR
NT seq
4056 nt
NT seq
+upstream
nt +downstream
nt
atgcagaatccagccgcctccggtcccgccgcgcccgccgacgccccgaccgcccgtgag
ctgcaccgccggctcaccccgttgatgttccgcgaccagcgtcgcctccagcggcggctg
gacggggtgcgcaagctgcgcgacccgcagcggcgcgacgaggcgctggccgagatcgcc
ggtgaggtgtcccgggcggagggccggctggccacccggcgggccgccgtgccgacgatc
acgtaccccgcgcagttgccggtcagcgagcgccgcgacgacatcgccgccgcgatccgc
gaccaccaggtggtgatcgtggccggcgagaccggctccggcaagaccacccagctaccc
aagatctgcctggagctggggcgcgggatcaccggcctgatcgggcacacccagccccgc
cggctggccgcgcggacggtcgccgaccggatcgccgaggagctcggcaccgagctgggc
gacgtggtcggctacaaggtgcgcttcaccgaccaggtgagcgaccgtagcctggtcaag
ctgatgaccgacggcatcctgctcgccgagttgcagaccgaccggatgctgcgccagtac
gacacgttgatcatcgacgaggcgcacgagcgcagcctcaacatcgacttcatcctcggc
tacctgcgccagctgctcccccggcgtcccgacctcaaggtggtcatcacctcggcgacc
atcgagaccgaccggttcgcccagcacttcgccgacgccgacgggcggcccgcaccggtg
gtcgaggtctccgggcggacgtacccggtggaggtgcggtaccggccgctggtggaggtc
accgagggcgacgacgacggggccgacgacgaggagaacgtccgcgaccagatccaggcg
atcggcgacgcggtgcaggagctggccgccgagggtcccggcgacatcctggtcttcctc
agcggcgaacgggagatccgggacaccgccgaggcgctgggcaagctgacccagtcgaaa
cgcgcgctgctcggcaccgagatcctgccgctgtacgcccggctgtcggccgccgaacag
caccgggtcttcgccccgcaccccggacgccgggtggtgctcgccacgaacgtcgcggag
acctcgctgaccgtccccggcatcaagtatgtggtggacccgggttcggcccggatctcc
cgctactccagccggctcaaggtgcagcggctacccatcgagccggtctcccaggcgtcg
gccaaccagcgcaagggccgctgcggccggacctcggacggcatctgcatccggctctac
gacgagcaggacttcgcctcccggccggagttcaccgacccggagatcctgcgcaccaac
ctcgcctcggtcatcctccagatgaccgcgatcggtctcggtgatctcgccgcgttcccg
ttcatcgacccgccggaccggcgcaacatcaccgacggggtcaacctgctgcacgagctg
ggcgcgctggacccgaccgagaccgacccggccaagcggctcaccccgctgggccggcgg
ctggcccagctcccggtcgacccccggctggcccggatggtcatcgagggggaacgcaac
ggctgcgccaccgaggtgctggtgatcgccgccgccctgtcgatccaggacccccgggaa
cggccggcggagaagcaggcccaggccgaccaggcgcacgcccggttcaccgaccgggag
tccgacttcgtgtcgctgctcaacctgtggcggtacctgcgtgagcagcagcgggagctg
tcctccagcgcgttccgccggatgtgccgggcggagtacctcaactacctgcgggtgcgc
gagtggcaggacatcgtcgcccagttgcgtcaggtgctgcgtaccccggagcagggcgac
gggcggcggggccggcggggcgcggcgcagcccccggccgacgggggccggcgcggggtc
gccgccgacctgccggaggagatcgacaccccgaaggtgcaccagtcgctgctgcccggc
ctgctgtcgcacatcgggctcaaggacgcccagaagcacgagtacctgggcgcgcggggg
gcgaagttcgcggtcttcccggggtcggcgctgttcaagaagccgccgcgctgggtgatg
gccgccgagctggtggagacctcccggctgtggggccgggtcgccgggcgggtcgagccg
gagtgggtggagccgctggcccagcacctggtcaaacgcagctacagcgagccgcactgg
gagaagaagcaggccgccgtcatggcctacgagaaggtcaccctgtacggcgtcccgctg
gtcagctcccgcaaggtcaacttcggtcggatcgatccggcgctgagccgggaactgttc
atccggcacgccctggtggagggcgactggcagacccaccaccagttctggcgggacaac
gagaagctccgcaccgaggtcgaggagttggagaaccgggcccgccgccgggacatcctg
gtcgacgacgagagcatcttcgccttctacgaccagcgcgtccccgccgacgtggtctcc
ggccggcacttcgacgcctggtggaaggtggcccgccgacagcagcccgacctgctcacc
ttcacccgggaactgctggtcaacgccggacgcggcggggtcgacgaggccgacttcccg
gacgagtggcgggccgacggggtgaccctgccgctgacgtacaccttcgacccgaccgcg
cccaccgacggcgtcaccgtggacatcccgctgccgctgctcaaccaggtgccggcggag
agcttcgactggcaggtgccggggctgcgcgaggaactggtgatcgcgctgatccggacg
ctgcccaaggcggtgcggcgcaacttcgtcccggtgcccgaccacgcccgcgcggcgctc
gccgcgatcacccccggcgaggagccgctgctggacgcgttgacccggcaactgcgccgg
atgaccggggtgaccgtgccccgggaggcgtgggagccggcgaagctgccgccgcacctg
cgggtgacgttccgggtgatcggtgacgcggacaagccggtcgccgagggcaaggacctg
ccggccctgcaacgccagctccgccaggaggtacgtcaggtggtggccgccgccgcgccg
gaggtgacccggaccgggctgaccgggtggaccatcggcaccctgccgcgcaccatcgag
caggtgcgggccggctacgcggtgaccgcctacccggcgctggtcgacgagggcacgacg
gtcggggtgaaggtcttcgactccgaggccgagcaggccgccgcgcactgggcgggcacc
cggcggttgctgcggttgaccgtgccgtccccggcgcagttcctccaggggcggttgagc
aacgaggcgaagctggcgttgagccgcaacccgcacggcggggtgcagcagctcatcgcc
gacgccgccggggccgccatcgacaagttgatcgccgacgcgggcggcccggcctgggac
gccgacggcttcgccgccctgcgcgaccgggtccgcgccgacctggtcgacacggtggtc
gaggtgatgggccgggtccgccaggtgctcgccgccgcgtacgcggtggagcagcggctc
ggcgcgacccgcaacctggccgtggtggccgccctggccgacctgcgtcagcagctcacc
ggcctggtgcacgacggtttcgtcaccgaggccgggtacgcccggctgcccgacctgctg
cgctacctcaccgcgatggaacgccggctggaccggctgaccgccaacccgcagcgggac
aaacagcagcaggaccggatcgccacggtgcagcaggagtaccgggacatggtggccgcg
ctgcccccggcccgccgcgcctcggccccggtgcggcagatccgctggatgatcgaggag
ctgcgggtgaacgtcttcgcgcaggccctcggcaccccctatccggtctccgagcagcgc
atctaccgcgcgatggacgacgccgaggggcgctga
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