Micromonospora sp. HM134: FJK98_10465
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Entry
FJK98_10465 CDS
T06145
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
mich
Micromonospora sp. HM134
Pathway
mich03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mich00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FJK98_10465
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mich03019
]
FJK98_10465
03400 DNA repair and recombination proteins [BR:
mich03400
]
FJK98_10465
Enzymes [BR:
mich01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FJK98_10465
Messenger RNA biogenesis [BR:
mich03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FJK98_10465
DNA repair and recombination proteins [BR:
mich03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
FJK98_10465
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
DUF3553
PcrA_UvrD_tudor
HRDC
Motif
Other DBs
NCBI-ProteinID:
QDY07542
UniProt:
A0A518WE64
LinkDB
All DBs
Position
complement(2340862..2342493)
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AA seq
543 aa
AA seq
DB search
MKLSMHSTTLRRAARSLFGWKALRPNQLAAMRAVMKRRDALVVLPTGAGKSAIYQIPASL
IPGPTVVISPLLALQQDQIAALNERQRPELRAVRISSDESAAQQAEAIEEIRQGRAEFLF
ITPEALANPDRMAEVKSLRPALVAIDEAHCISAWGHDFRPDYLALGHLIDGLGRPPVVAL
TATASPPVRDDIIARLRLRDPEVVVSGLDRPNLFVEVAYCPTDDYRWRRLIALLRDDERP
GIIYVPTRRAAEVLAERLTTAGFPAEYYHGGMPTAARHGLHEAFLADQVPIMVATSAFGM
GIDKPNIAWVVHMALPDSPDSYFQEIGRAGRDGAPARVLLLWRAEDVGLQRFFSGGLPDE
TELRDLAALLRRRATTKKALREATGLGPRKLGQYLALLEQIGAAEPRAGQKIGAPRYSPT
PVEAGAAALAEAERQQTVTRSRTDMMRAFAETTGCRGQVLLAYFGEQMSQVCGHCDNCHA
GTSVASDGAVGPFPVHSQVRHPEWGPGLVLNCEEDRMTVLFDEVGYKTLSVRVVSEQGLL
TLD
NT seq
1632 nt
NT seq
+upstream
nt +downstream
nt
atgaagctgtccatgcactcgacgacgttgcgccgcgcggcgcgcagcctgttcggctgg
aaagcgctgcggcccaaccagctcgccgccatgcgcgcggtgatgaaacgacgcgacgcc
ctggtggtgctccccaccggagccggcaagtcggcgatctaccagatcccggcgagcctg
atccccgggccgacggtggtgatctcccccctgctggccctccagcaggaccagatcgcc
gcgctcaacgaacgccagcgccccgagctgcgcgccgtccggatcagctccgacgagagc
gccgcccagcaggccgaggcgatcgaggagatccggcaggggcgggcggagttcctcttc
atcaccccggaggcgctggccaaccccgaccggatggccgaggtgaagtcgctgcgaccg
gccctggtggcgatcgacgaggcgcactgcatctcggcgtgggggcacgacttccgcccc
gactacctggcgttgggccacctgatcgacggtctcggccgtccgccggtggtggcgctg
accgccaccgcctccccaccggtacgcgacgacatcatcgcccggctgcggctgcgcgac
cccgaggtggtggtctccgggctggaccggccgaacctgttcgtcgaggtcgcctactgc
cccaccgacgactaccgctggcggcggctgatcgcgttgctacgcgacgacgagcggccc
ggcatcatctacgtgccgacccggcgggccgccgaggtgctggccgagcggctgaccacg
gccggtttcccggcggagtactaccacggcggtatgcccaccgccgcccggcacgggctg
cacgaggcgttcctcgccgaccaggtgccgatcatggtggcgacgtcggcgttcggcatg
ggcatcgacaagccgaacatcgcctgggtggtgcacatggcgctgcccgactcgccggac
agctacttccaggagatcggccgggccgggcgcgacggtgcgccggcccgggtgctgctg
ctgtggcgggccgaggacgtcggcctgcaacgcttcttctccggcggcctgccggacgag
accgaactgcgggacctggccgcgctgctgcgtcgccgggcgacgacgaagaaggcgctg
cgcgaggcgaccggcctcgggccgcgcaagctcgggcagtacctggccctgctggagcag
atcggggcggccgaaccccgggccgggcagaagatcggcgcaccgcgctactcccccacc
ccggtcgaggcgggcgcggcggccctggccgaggccgaacggcagcagacggtgacccgc
tcgcgtaccgacatgatgcgcgccttcgccgagaccaccggctgccgggggcaggtgctg
ctggcctacttcggcgagcagatgtcgcaggtctgcgggcactgcgacaactgccacgcc
ggcaccagcgtggcaagcgacggcgcggtcggcccgttcccggtgcacagccaggtgcgg
cacccggagtggggccccgggttggtgctcaactgcgaggaggaccggatgacggtgctc
ttcgacgaggtgggttacaagacgctctccgtgcgcgtggtgtccgaacagggtctgctg
acgctggactag
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