Micromonospora sp. HM134: FJK98_16660
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Entry
FJK98_16660 CDS
T06145
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mich
Micromonospora sp. HM134
Pathway
mich03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mich00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FJK98_16660
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mich03019
]
FJK98_16660
03009 Ribosome biogenesis [BR:
mich03009
]
FJK98_16660
Enzymes [BR:
mich01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FJK98_16660
Messenger RNA biogenesis [BR:
mich03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FJK98_16660
Ribosome biogenesis [BR:
mich03009
]
Prokaryotic type
rRNA helicases
FJK98_16660
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
WSD
Motif
Other DBs
NCBI-ProteinID:
QDY08577
LinkDB
All DBs
Position
complement(3898062..3899786)
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AA seq
574 aa
AA seq
DB search
MSSAPTPTDLSAPDDSDGGPAFVDLGLRAELLGALAALGYEEPTPIQREAIPLLLSGRDL
LGQAATGTGKTAAFALPLLQRMPEDRQGGDPVSLVLVPTRELAVQVSEAFHRYGKDLGAR
VLPIYGGQPIGRQLRALDLGVDVVVATPGRALDHIARGTLRLGSLATVVLDEADEMLDMG
FAEDIEAILEHAPAQRQTVLFSATMPARIDGLARQHLTDPERIQIGREQPVAGEAPRVRQ
SAYIVTRAHKPALLGRVLDVESPTAAIVFCRSREEVDRLTETMNGRGYRAEALHGGMSQE
QRDRVMGRLRAGTADLLVATDVAARGLDVEQLTHVVNYDVPSAPESYVHRIGRVGRAGRE
GVAITLAEPREHRMLKTIERVTGQRITIDKIPTVADLRTRRLALTQAALRESLLEDDLDP
FRVIVESLSDEFDLMEVALAAVKLAHEAALPGSDDEEEIPQVAVRPPREPRPGFDGRGGE
RRGGGAGRPRTGGTAQVFIGLGRRAGVRPQDLVGAITGETRVSGRDIGSIEIADRFSLVE
VPQGVADEVIAGLRNSTIKGRKATVRRDRGGDGR
NT seq
1725 nt
NT seq
+upstream
nt +downstream
nt
atgagttccgcacccacaccgaccgacctctccgctcccgacgactccgacggcgggccc
gccttcgttgatctcgggctgcgcgccgagttgctgggcgccctcgccgcgctcggctac
gaggagccgaccccgatccagcgggaggcgatccccctgctgctgtcgggacgggacctg
ctcgggcaggcggccaccggtacgggcaagaccgccgcgttcgccctgccgctgttgcag
cggatgccggaggaccgtcagggcggcgacccggtgtcgctggtgctggtgcccacccgg
gaactggccgtgcaggtctccgaggcgttccaccggtacggcaaggatctcggtgcccgg
gtgctgccgatctacggcggccagccgatcggccgccaactgcgcgccctggacctgggc
gtggacgtggtggtggcgaccccgggccgggcgctggaccacatcgcccggggcaccctg
cggttgggttcgctggccacggtggtgctggacgaggccgacgagatgctcgacatgggc
ttcgccgaggacatcgaggcgatcctggagcacgcgcccgcgcagcggcagacggtgctc
ttctcggccaccatgccggcccggatcgacgggctggcccgccagcacctgaccgacccg
gagcgcatccagatcgggcgggagcagccggtggccggcgaggcgccccgggtacggcag
agcgcctacatcgtgacccgggcgcacaagccggcgctgctgggccgggtgctggacgtg
gagtccccgacggcggcgatcgtcttctgccgcagccgggaggaggtcgaccggctcacc
gagacgatgaacgggcggggctaccgggccgaggcgctgcacggcgggatgagccaggag
cagcgggaccgggtgatggggcggctgcgtgccggcaccgccgacctgctggtggccacc
gacgtggcggcccggggcctggacgtcgagcagctcacccacgtggtcaactacgacgtg
ccgtccgcgccggagtcgtacgtgcaccggatcgggcgggtgggtcgggccggccgggag
ggggtggcgatcaccctggccgagccccgggagcaccggatgctcaagaccatcgagcgg
gtcaccggccagcggatcaccatcgacaagatcccgacggtggccgacctgcgcacccga
cggctggcgctgacccaggcggcgctgcgggagagcctgctggaggacgacctggacccg
ttccgggtgatcgtcgagtcgctgtcggacgagttcgacctgatggaggtggcgctggcg
gcggtcaagctggcccacgaggcggccctgccgggctccgacgacgaggaggagatcccg
caggtggcggtccgtccgccccgggagccccggcccgggttcgacggccggggcggggag
cggcgtggcggcggtgccggccggccccgcacgggcggcaccgcgcaggtcttcatcggc
ctgggccgccgggccggggtccgcccgcaggacctggtcggcgcgatcaccggggagacc
cgggtgagcggccgggacatcggctcgatcgagatcgccgaccggttctcgctggtggag
gtgccgcagggcgtcgccgacgaggtgatcgccgggctgcgcaacagcaccatcaagggc
cgcaaggcgaccgtacggcgcgaccgcggcggcgacgggcgctga
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