Micromonospora sp. HM134: FJK98_16880
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Entry
FJK98_16880 CDS
T06145
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
mich
Micromonospora sp. HM134
Brite
KEGG Orthology (KO) [BR:
mich00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mich03016
]
FJK98_16880
Enzymes [BR:
mich01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
FJK98_16880
Transfer RNA biogenesis [BR:
mich03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
FJK98_16880
Prokaryotic type
tRNA splicing ligases
FJK98_16880
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QDY08614
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Position
3947992..3949191
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AA seq
399 aa
AA seq
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MAFTPLPGTKAPVRVWTDPYGIEPQAAQQLRNIGALPWVQGVAVMPDVHYGKGATVGSVI
AMRQAVSPAAVGVDIGCGMSAVRTSLTAADLPDDLAPLRSAIEAAVPVGFAKRDDPVDPR
RVRGLEQRGWDDFWARFATLDRKVAQLESRARHQLGTLGGGNHFIEVCVEQDGPDAGQVW
LMLHSGSRNIGKELAERHIGVARALPHNADLPDRDLAVFLAGTPEMDAYRRDLWWAQEYA
RRNRAVMLALLCGVVRDAFPQVSYGEPISCHHNYVAEEHYDGVDVLVTRKGAIRAGRGDL
GIIPGSMGTGSYIVRGRGNPDAYCSASHGAGRRMSRAQAKRTFDTADLARQTAGVECRKD
AGVVDEIPGAYKDITEVMARQDDLVEVVAHLKQVVCVKG
NT seq
1200 nt
NT seq
+upstream
nt +downstream
nt
atggcattcaccccgctgccgggcaccaaggccccggtacgggtctggaccgacccgtac
ggcatcgagccgcaggccgcgcagcagttgcgcaacatcggcgcgctgccctgggtgcag
ggcgtcgcggtgatgccggacgtgcactacggcaagggcgccaccgtcggctcggtgatc
gcgatgcggcaggccgtctcgccggccgccgtcggggtggacatcggctgcgggatgagc
gcggtacgcacctcgctcaccgccgccgacctgcccgacgacctcgcgccgctgcggtcg
gcgatcgaggcggccgtcccggtcggcttcgccaagcgggacgacccggtcgacccgcgt
cgggtccggggcctggagcagcgcggctgggacgacttctgggcccggttcgccaccctt
gaccggaaggtggcgcagctggagagccgggcccggcaccagttgggcaccctcggtggc
ggcaaccacttcatcgaggtctgcgtcgagcaggacggcccggacgccgggcaggtctgg
ctgatgctgcactccggttcccgcaacatcggcaaggagttggccgagcggcacatcggg
gtggcccgtgccctgccgcacaacgccgacctgcccgaccgggacctggcggtgttcctc
gccggcaccccggagatggacgcctaccggcgggacctgtggtgggcgcaggagtacgcg
cggcgcaaccgggcggtcatgctggccctgctctgcggcgtggtccgggacgccttcccg
caggtcagctacggtgagccgatctcctgccaccacaactacgtggcggaggagcactac
gacggggtggacgtgctggtgacccgcaagggggcgatccgggccggccggggggacctg
ggcatcatcccggggtcgatgggcaccgggtcgtacatcgtgcgggggcgggggaacccc
gacgcgtactgctcggcgtcgcacggggccggccggcggatgtcccgggcgcaggcgaag
cgcacgttcgacaccgccgacctggcccggcagaccgccggggtggagtgccgcaaggac
gccggggtggtcgacgagatccccggcgcgtacaaggacatcaccgaggtgatggcccgg
caggacgacctggtcgaggtggtggcccacctcaagcaggtggtgtgtgtgaagggttag
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