Micromonospora sp. HM134: FJK98_29260
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Entry
FJK98_29260 CDS
T06145
Name
(GenBank) DEAD/DEAH box helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
mich
Micromonospora sp. HM134
Pathway
mich03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mich00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FJK98_29260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mich03019
]
FJK98_29260
03400 DNA repair and recombination proteins [BR:
mich03400
]
FJK98_29260
Enzymes [BR:
mich01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FJK98_29260
Messenger RNA biogenesis [BR:
mich03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FJK98_29260
DNA repair and recombination proteins [BR:
mich03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
FJK98_29260
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
Pribosyltran
RecQ_Zn_bind
Motif
Other DBs
NCBI-ProteinID:
QDY10734
UniProt:
A0A518WNB7
LinkDB
All DBs
Position
complement(6728232..6730478)
Genome browser
AA seq
748 aa
AA seq
DB search
MDQGPAGEQDRAAVRERAEEVLRRLAGAHARLREDQWRAIEALVVDRRRVLCVQRTGWGK
SAVYFVATALLRERGEHGPTVIVSPLLALMRNQVEAAARAGIRARTINSANLDEWDEITA
EIHAGTVDVLLISPERLNNPDFRDTVLPRLAATTGLLVVDEAHCVSDWGHDFRPDYRRLR
TFLGNLPERTPVLATTATANERVTRDVAEQLGTEPAPRADRAAPASDRDATPTADPAASP
ADAGGRRADVLVLRGTLDRESLRLGVLDLPSPAHRLAWLADHLDALPGSGIIYTLTVAAA
TETAEFLRGRGWSVASYTGQAEDADRRAAEQDLLDNKIKALVATSALGMGFDKPDLGFVV
HLGAPPSPIAYYQQVGRAGRAVEHAEVLLLPGVEDAAIWRYFASLAFPPEEQVRAVLAAL
HTDRPLSTQALEPLVDLRRTRLELMLKVLDVDGAVRRVRGGWLATGEPWTYDEARLRRVA
EARTAEQQAMREYATTPGCRMRYLRNCLDDSGAGDCGRCDRCAAPLFTAEVSGPALTAAQ
TFLGRPGVQIAPKKLWPTGLDVVGVPLKGRIPPTEQALPGRAVGRLSDLGWGGRLRALVG
PGTADGPVPDDVVTAVVEVLKAWAHGDDPWPRRPAGVVAVGSRSHPTLVASLAERIATVG
RLPLLGPVTPTGPAGAGGPRGNSAQRVRALHDAFTVGDEVAGALAGLDGPVLLVDDLVDS
GWTMTMVARLLRRTGAPDVLPLALAVAG
NT seq
2247 nt
NT seq
+upstream
nt +downstream
nt
gtggatcaggggccggcgggggagcaggatcgggcggcggtacgggagcgggccgaggag
gtgctgcggcggctggccggcgcgcacgcccggctgcgggaggaccagtggcgggccatc
gaggcgctggtggtggaccggcgtcgggtgctctgcgtgcagcgcaccgggtggggcaag
tcggcggtctacttcgtggccaccgccctgctacgcgaacgcggtgagcacgggccgacg
gtcatcgtctcgccgctgctggcgttgatgcgcaaccaggtggaggcggcggcccgcgcc
ggcatccgggcccgcaccatcaactccgccaacctcgacgagtgggacgagatcaccgcc
gagatccacgccggcacggtggacgtgctgctgatcagccccgagcggctcaacaacccc
gacttccgggacaccgtcctgccgaggctggccgccaccaccgggctgctggtggtggac
gaggcgcactgcgtctccgactgggggcacgacttccggcccgactaccgccggctgcgg
accttcctgggcaacctgccggagcggaccccggtgctggccaccaccgccaccgccaac
gagcgggtgacccgggacgtcgccgagcaactcggcaccgaaccggccccacgggccgac
cgcgccgccccggcgtcggaccgtgacgcaacgccgaccgccgatcctgccgcgtcgccc
gccgacgccggtggacggcgggccgacgtgctggtgctgcggggcaccctggaccgggag
tcgctgcgcctcggcgtgctcgatctgcccagcccggcgcaccggttggcctggctcgcc
gatcacctggacgcgctgcccggctcggggatcatctacacgctcaccgtggcggcggcc
accgagaccgccgagttcctgcgcgggcgcggctggtcggtggcctcgtacaccggccag
gccgaggacgccgaccgccgcgccgccgaacaggacctgctcgacaacaagatcaaggcg
ttggtggcgaccagcgcgctcgggatggggttcgacaagcccgacctcggcttcgtggtg
cacctgggtgcgccgccctcgccgatcgcctactaccagcaggtcggccgtgccggtcgg
gccgtcgaacacgccgaggtgctgctgctgcccggggtcgaggacgcggcgatctggcgc
tacttcgcctcgctcgccttccctccggaggagcaggtgcgcgccgtgctggccgccctg
cacaccgaccggccgctctccacccaggccctcgaacccctcgtcgacctgcgccggacc
cgcctcgaactgatgctcaaggtgctcgacgtcgacggcgcggtccgccgggtacgcggg
ggctggctcgccaccggcgaaccctggacctacgacgaggcccggttgcgccgcgtcgcc
gaggcccgcaccgccgaacagcaggccatgcgcgagtacgccacgacgcccggctgccgc
atgcggtacctgcggaactgcctggacgacagcggggcgggtgactgcggccggtgcgac
cgctgtgccgcgcccctgttcaccgccgaagtgtccggccccgcgttgaccgccgcgcag
accttcctcggccgccccggggtgcagatcgcccccaagaagctctggccgaccggcctc
gacgtggtcggcgtaccgctgaaggggcggattcccccgacggagcaggcactgcccggc
cgggccgtggggcggctgtccgacctgggctggggcggccggctgcgcgccctggtcggg
cccggcacggccgacggcccggtgcccgacgacgtcgtgaccgccgtggtggaggtgctg
aaagcctgggcccacggcgacgatccgtggccgcgccgtccggccggcgtggtcgcggtc
ggctcccgcagccacccgaccctggtcgcgtcgctcgccgagcggatcgccacggtcggc
cggctgccgctgctcggcccggtcaccccgaccggtccggccggggccggcgggccgcgc
ggcaacagcgcccagcgggtacgcgccctgcacgacgccttcaccgtcggcgacgaggtg
gccggggcactggccgggctggacggcccggtgctgctcgtcgacgacctggtcgactcc
ggctggacgatgacgatggtggcccgcctgctgcgccggaccggtgcccccgacgtcctc
ccgctcgccctcgccgtcgccggctga
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