Microbacterium sp. HA-8: AB2L57_06550
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Entry
AB2L57_06550 CDS
T10924
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
mici Microbacterium sp. HA-8
Brite
Enzymes [BR:
mici01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
AB2L57_06550 (hrpA)
Messenger RNA biogenesis [BR:
mici03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
AB2L57_06550 (hrpA)
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Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
XLP04739
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Position
complement(1365469..1369434)
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AA seq
1321 aa
AA seq
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MSVPAAKIDAVISFPPELPVSAARDEIAAAIRDHQVVIVAGATGSGKTTQLPKICLELGR
ERIAHTQPRRIAARTIAERIADELEVELGTVVGYKVRFTDKVSDATRVALVTDGILLNEI
HRDRLLRRYDTIIVDEAHERSLNVDFLLGYLRRILPERPDLKVVITSATIDPESFAAHFA
DAGGTPAPIIEVSGRTYPVEVRYRALVADDEAATYDVDGDEIAGIVQALRELDREPAGDV
LVFLPGEAEIRDAAEAVRGAYAQASSPTEVLPLYGRLSAAEQHRVFERSKVAGVRRRVVL
ATNVAETSLTVPGIKYVVDVGTARISRYSTRAKVQRLPIEAVSQASAQQRSGRAGRTSDG
VAIRLYSEEDFAARPEFTEPEILRTSLASVTLQMLALGFGDIQAFPFLTPPDSRGVMAAL
DLLVELGAVTLRPGAEPRLTKIGREIARMPIDPRFARMLIESQRTGTTRELLAIVAGMSI
QDVRERPEEAREQADRLHARFVDPTSDFLTLLNLWNHLQEQARELGSSAFRRLCRAEHLN
YVRVREWFDVHRQLRSFVRDPERDRRTAPAPRTAPEPVEGATADPDALHRAILAGLLSHI
GVLDARALAKATNERRDRRPAPAEYLGARGVRFQVFPGSGLKKKRPAAIMAAELVETSRL
YGRTIAAIDPAWAESLAGDLAKRQVNEPHWSKDAGAAVADEKVTLFGVEIIPRRRVQFAR
IDPAGARELFVRHALVEGEWNADRLDKRLTAFVRANHELRRRLEKVEERERRRDILAGDE
AVFDFYDARIPRDVFDVRSFETWWRDEQGRTPHLLSMREQDLVEGEARADAREFPTRWTQ
GDQTLTLAYRFEPGAEDDGVNVVVPLPLLAGLRADGFDWQVPGLRAELIAGLLRALPKAI
RRNVVPAADWAARFADDLAGAGPEDHAGLPSDTLVDALARRVQRVANQPVTAADFELDRV
PAHLRMAFRVVDARGRTAGAGRDLAELQARLAGRARESVASRLSAPAPAARPGRVAGASP
ASPGTAQASSHTVTERSGITTWDLGSLPEVVDTRVAGGVVRGYPTLVDEVTSVALRVETT
PEAAARALRGGIRRLVLLAVPSPVSYVQEHLAANEKLALAASPYPSAKALIEDCRAAAAD
ALIESVAPGGIVRTHADFERVRDAVSAGIVDALFACVSQVARILLLQRDVDRALRGQNAL
TVLGALNDVRAQVGGLVFAGFVSRLGTARLAHLPRYLQGALQRLQGLADNPGRDRARMSE
FERAWAPFAEAGGAVPLPPHPPSGLAHARWLLEEYRISLFAQSLGTAEPVSPQRITKALR
G
NT seq
3966 nt
NT seq
+upstream
nt +downstream
nt
atgtccgtgcccgccgccaagatcgacgccgtgatctcgttcccgcccgagctgcccgtc
agcgccgcgcgcgacgagatcgccgccgcgatccgcgaccaccaggtcgtgatcgtcgcc
ggcgcgacgggctcgggcaagaccacgcagctgccgaagatctgcctcgagctcggccgc
gagaggatcgcgcacacccagccgcgccgcatcgccgcgcgcaccatcgccgagcgcatc
gccgacgagctcgaggtcgagctcggcacggtcgtgggctacaaggtgcgcttcaccgac
aaggtctccgacgcgacgcgggtggcgctcgtgaccgacgggatcctgctcaatgagatc
catcgcgaccggctgctgcgccgatacgacacgatcatcgtcgacgaggcgcacgagcgc
agcctcaacgtcgacttcctcctcgggtacctgcggcgcatcctccccgagcgccccgat
ctcaaggtcgtcatcacctcggcgacgatcgatcccgagagcttcgcggcgcacttcgcg
gatgccgggggcacccccgccccgatcatcgaggtctcggggcgcacctaccccgtcgag
gtgaggtatcgcgcgctcgtcgccgacgacgaagccgccacctacgacgtcgacggcgac
gagatcgcgggcatcgtgcaggcgttgcgcgagctcgatcgcgagcccgccggcgacgtg
ctggtgttcctgcccggcgaagcagagatccgcgatgccgccgaggccgtgcgcggagcg
tacgcgcaggcgtcctcccccacagaggtgctgcccctgtacggccgtctgagcgccgcc
gagcagcatcgcgtgttcgagcgctcgaaggtcgcgggcgtgcgccgtcgcgtcgtcctc
gcgaccaacgtcgccgagacgagcctcaccgtgccgggcatcaagtacgtcgtggatgtc
ggaaccgcccgcatctcgcgctacagcacgcgcgccaaggtgcagcgtctgccgatcgag
gccgtctcccaggcgtcggcacagcagcggtcgggccgcgcggggcgcacgagcgacggc
gtcgcgatccgtctctattcggaggaggacttcgcggcgcgtcccgagttcaccgagccc
gagatcctgcgcacgagcctcgcctcggtcaccctgcagatgctcgccctgggcttcggc
gacatccaggccttccccttcctcaccccgcccgactcgcggggcgtgatggcggcgctc
gatctgctggtcgaactcggcgccgtcacgctgcgcccgggcgccgagccgaggctgacg
aagatcggacgcgagatcgcgcggatgccgatcgacccgcggttcgcgcgcatgctcatc
gagtcgcagcgcacgggaacgacccgggagctgctcgcgatcgtcgccggcatgtcgatc
caggacgtgcgcgagcgcccggaagaagcccgtgagcaggccgaccgcctgcatgcgcgc
ttcgtcgatcccacgagcgacttcctcaccctgctgaacctctggaaccacctgcaggag
caggcgcgcgagctgggctccagcgccttccggcgcctgtgccgcgccgagcacctcaac
tatgtgcgcgtgcgcgagtggttcgacgtgcatcgccagctgcgctcgttcgtgcgcgat
cccgagcgagaccgccgcacggctcccgcgccccgcacggcccctgagcccgtcgaaggg
gccaccgccgaccccgacgcgctgcaccgcgcgatcctcgccggcctgctctcgcacatc
ggcgtgctcgatgcccgcgcactcgcgaaggcgacgaacgagcggcgcgaccggcggccg
gcgcccgccgagtatctcggggcgcgcggtgtgcgattccaggtctttccaggctcgggg
ctgaagaagaagcgccccgcggcgatcatggcggccgaactcgtcgagacctcgcgcctg
tacggccgcacgatcgcggcgatcgatcccgcgtgggccgagtccctcgccggcgacctc
gcgaagcgtcaggtcaacgagccgcactggtcgaaggatgccggagccgcggtcgcggac
gagaaggtgacgctgttcggggtcgagatcatcccgcgccgccgggtgcagttcgcccgg
atcgaccctgccggcgcccgcgaactgttcgtgcggcacgcgctcgtcgagggcgagtgg
aacgccgatcgcctcgacaagcgattgacggcgttcgtgcgcgcgaaccacgaactgcgg
cggcgccttgagaaggtcgaggagcgggagcggcgccgcgacatcctcgcgggcgacgag
gcggtgttcgacttctacgacgcgcgcatcccgcgcgacgtcttcgacgtccgctccttc
gagacgtggtggcgcgatgagcagggacgcacgccgcatctgctgtcgatgcgcgagcag
gacctcgtcgagggcgaggcgcgcgccgacgcccgcgagttcccgacgcggtggacgcag
ggggatcagaccctgaccctggcctatcggttcgagcccggcgccgaggacgacggcgtg
aacgtcgtcgtgcccctgccgctgctggcggggctccgcgccgacggcttcgactggcag
gtgccgggccttcgcgccgagctcatcgccgggctgctgcgcgcgctgcccaaggcgatc
cgccgcaacgtcgtgcccgccgccgactgggccgcgcgcttcgccgacgacctcgccggt
gccgggcccgaggaccacgccggcctcccctccgacacgctcgtggacgccctcgcacgg
cgcgtgcagcgcgtggcgaaccagccggtgacggcggcggacttcgagctcgaccgcgtg
cccgcgcacttgcggatggccttccgcgtcgtcgatgcccgcgggcgcaccgcgggcgcc
ggccgtgacctcgccgagctgcaggcgcggctcgccggccgggcgcgcgagagcgtcgcc
tcacggctgagcgcaccggcccccgcggcccggcccgggcgcgtggcgggcgcgtccccg
gcctcgcccggcacggcgcaggcgtcgagccacacggtcacggagcgctcgggtatcacc
acgtgggatctcggctcgctgcccgaggtcgtggacacccgggtcgccggcggcgtcgtc
cgcggatacccgaccctcgtcgacgaggtgacgagcgtggcgctgcgggtcgagacgaca
ccggaggccgccgcgcgggcgctgcggggcggcatccgtcgcctggtgctgctcgccgtg
ccctctccggtgtcgtacgtgcaggagcatctcgccgccaacgagaagctcgccctggcc
gcatcgccgtacccgtcggcgaaggccctcatcgaggactgccgcgccgccgccgccgac
gcgctgatcgagtccgtcgcgccgggcggcatcgtgcgcacccacgccgacttcgagcgg
gtgcgggatgctgtctcggcgggcatcgtcgatgcgctcttcgcctgcgtgtcacaggtg
gcgcgcatcctcctcctgcagcgcgacgtcgatcgtgcgctgcgcggtcagaacgcgctg
accgtgctgggtgcgctgaacgatgtgcgcgcgcaggtcgggggtctcgtgttcgccggg
ttcgtgtcgcgtctgggcaccgcgcgcctcgcgcacctgccgcggtatctgcagggcgcg
ctgcagcgactgcaggggctcgccgacaatcccgggcgcgaccgcgcgcgcatgagcgag
ttcgagcgtgcgtgggccccgttcgcggaggcgggcggcgccgttccgcttccgccgcac
ccgccctcggggctcgcgcacgcgcgctggctgctcgaggagtaccgcatcagtctcttc
gcgcagtcgctcggcacggccgagccggtctcgccccagcgcatcacgaaggcgctccgc
gggtag
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