Microbacterium sp. HA-8: AB2L57_10555
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Entry
AB2L57_10555 CDS
T10924
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mici Microbacterium sp. HA-8
Pathway
mici03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mici00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AB2L57_10555
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mici03019
]
AB2L57_10555
03009 Ribosome biogenesis [BR:
mici03009
]
AB2L57_10555
Enzymes [BR:
mici01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
AB2L57_10555
Messenger RNA biogenesis [BR:
mici03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AB2L57_10555
Ribosome biogenesis [BR:
mici03009
]
Prokaryotic type
rRNA processing factors
AB2L57_10555
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
Motif
Other DBs
NCBI-ProteinID:
XLP02194
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All DBs
Position
2216820..2219366
Genome browser
AA seq
848 aa
AA seq
DB search
MADENSDLDRNDQNTPDAPLEQGAVPVAADAAEPAAPEQNPAAAQPEPAAPEQPEQDAAE
PEQPAQPEQPAQPEQPAQPEQAESTATEQPAQPEAEPASTYAVSAAADPESEAASQEPDP
EPGPLTAAALGLLPETFVSQVSTQLHFYAPEIVALPALPEEPAADASPQGGGQGSSRRRN
RRRAGEDAPSETDPGTVVKVRQPRAVEMITEPQRIKGSTRLEAKKQRRRDGREAGRRRAV
VTEAEFLARREAVDRVMVVRSKNGRIQIAVLEDNVLVEHYVARNQDASLIGNVYVGRVQN
VLPSMEAAFVDIGRGRNAVLYSGEVDWDSVETGNQPRRIELALKSGDKVLVQVTKDPVGH
KGARLTSQISLPGRYLVYVPGGAMNGISRKLPDTERARLKRILKEVLPESSGVIVRTAAE
GATEDQLTRDVGRLMTQWEHVSAQVDHVQAPALLHSEPDLLVKIVRDVFNEDFSRMLIQG
EEAHRTIEAYLESVAPDLLERIEAFSGDHDPFDEFRITEQIEKALDRKVWLPSGGSLVID
RTEAMTVVDVNTGKFVGSGGNLEETVTKNNLEAAEEIVRQLRLRDIGGIIVVDFIDMVLE
SNRDLVLRRLIECLSRDRTKHQVAEVTSLGLVQMTRKKLGLGLLETFSEACEVCAGRGVI
VHHDPVVKHRSAQPSGGTGSNRRSRGGAQPSSAAPATSGTHVITEGVKSALAQIAASTLG
HGPEADAAAEAASATVTADAITIVLPEGPGGSPEGDRPKKRRKRGERSERGERGGGERGD
RPGGERSDRSGSDAAERQGAPRTEKQQLLESVLQALPEPKAPGQGRARRRVSTGVLTGTP
VTMPGADE
NT seq
2547 nt
NT seq
+upstream
nt +downstream
nt
atggctgatgagaacagtgacctcgaccgcaacgaccagaacaccccggatgcgccgcta
gagcagggcgccgtccctgtcgccgcggatgcggctgagcccgccgcgccagagcagaac
ccggccgcggcgcagcccgagcccgctgctcccgagcagcctgagcaggatgcggcggag
cccgagcagccggcccagcccgagcagccggcccagcccgagcagccggcccagcccgag
caggcggagtcgaccgcgaccgagcagccggcccagcccgaggcggagccggcgtcgacc
tatgccgtgtctgcggcagccgatcccgaatcggaggccgcgtcccaagagcccgaccct
gagcccggccccctgaccgccgcggcgctcgggctgctgcccgagaccttcgtctcgcag
gtgtcgacgcagctgcacttctacgcgcccgagatcgttgcgctgcccgccctgccggaa
gagcccgccgccgacgcatcgccgcagggtggcggccagggatcctcccgtcgtcgcaac
cgccgccgagcgggcgaggatgcaccgagcgagaccgacccgggcaccgtcgtcaaggtg
cggcagccgcgcgcggtcgagatgatcaccgagccgcagcgcatcaaaggctcgacgagg
ctcgaggccaagaagcagcgacgtcgggacggtcgcgaagccggtcgccgccgcgccgtg
gtcaccgaggccgagttcctcgcacgccgcgaggccgtcgatcgtgtcatggtcgtgcgc
tcgaagaacgggcgcatccagatcgccgtgctcgaggacaacgtgctcgtcgagcactac
gtcgcgcgcaaccaggacgcctctctgatcggcaatgtgtacgtcggccgcgtgcagaac
gtgcttccgagcatggaggcggccttcgtcgacatcggccgcggtcgcaacgcggtgctg
tactcgggcgaggtggattgggattcggtcgagaccggcaaccagccccggcgcatcgag
ctggcgctcaagtccggcgacaaggtcctcgtgcaggtcacgaaggacccggtgggccac
aagggagcgcgcctgaccagccagatctcgctcccgggccgctacctcgtgtacgtgccg
ggcggcgcgatgaacggcatctcgcgcaagctccccgacaccgagcgcgcgcgcctgaag
cgcatcctcaaggaggtgctcccggagtcatcgggagtgatcgtgcgcacggccgccgag
ggggcgaccgaggatcagctcacccgcgatgtcggtcgactcatgacgcagtgggagcac
gtgagtgcccaggtggatcacgtgcaggcacccgcactgctgcactccgagcccgacctg
ctcgtcaagatcgtgcgcgacgtcttcaatgaggacttctcgcggatgctgatccagggc
gaggaggctcaccgcaccatcgaggcgtacctcgaatccgtcgcgcccgacctgctcgag
cggatcgaggccttctccggcgaccacgacccgttcgatgagttccgcatcaccgagcag
atcgagaaggccctggaccgcaaggtgtggctgccctcgggcggctcgctcgtgatcgac
cgcaccgaggcgatgacggtcgtggatgtcaacaccggcaagttcgtggggtccggggga
aacctcgaggagaccgtcaccaagaacaacctcgaggcggccgaagagatcgtccgtcag
ctgcgccttcgcgacatcggcggcatcatcgtcgtggacttcatcgacatggtgctggaa
tccaaccgcgatctcgtgctgcgccggctcatcgaatgtctgagccgtgaccggaccaag
caccaggtggcggaggtcacctcgctcggcctggtgcagatgacccgcaagaagctgggc
ctcggtctgctcgagaccttcagcgaggcctgcgaggtctgcgcggggcgcggcgtcatc
gtgcatcacgatcccgtcgtcaagcaccggtcggcgcagccctcaggcggaaccggctcc
aaccgtcgctctcgcggcggggcccagccctcgtcggcggctccggccacgtcgggcacc
cacgtcatcaccgagggcgtcaagtccgcgctcgcgcagatcgccgcgtccacgctcggc
cacggacccgaagcggatgctgccgccgaagccgcatcggccaccgtcacggccgatgcc
atcacgatcgtgcttccggagggtcccggcggatcgccggagggggatcggcccaagaag
cgccgcaagcgcggcgagcgttccgagcgcggcgagcggggcggcggcgagcgcggcgat
cggcccggtggcgagcgatccgatcgctccggctccgatgccgcggagcgtcagggcgcg
ccgcggacggagaagcagcagcttctcgagtcggtgctgcaggcactgcccgagccgaag
gcgccgggccaggggcgtgcccgccggcgggtgtcgacgggtgtgctcacgggcaccccg
gtcacgatgcccggtgcggacgagtga
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