Microbacterium sp. J1-1: LRQ07_08620
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Entry
LRQ07_08620 CDS
T11495
Name
(GenBank) DEAD/DEAH box helicase
KO
K03727
ATP-dependent RNA helicase HelY [EC:
5.6.2.6
]
Organism
micj Microbacterium sp. J1-1
Brite
KEGG Orthology (KO) [BR:
micj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
micj03019
]
LRQ07_08620
Enzymes [BR:
micj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
LRQ07_08620
Messenger RNA biogenesis [BR:
micj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
LRQ07_08620
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
DEAD
ResIII
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
MTR4_beta-barrel
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UUE22318
LinkDB
All DBs
Position
1813334..1815808
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AA seq
824 aa
AA seq
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MSSPSEKYARARQAAEHPESSAFAALQKFQLDPFQVAGCHALENGRSVLVAAPTGAGKTI
VGEFAIHLAMQTPTDKAFYTTPMKALSNQKFRELVDVYGADQVGLLTGDTNINGNARIVV
MTTEVLRNMIYADSTALRDLRYVIMDEVHYLADRFRGAVWEEVIIHLPAQVRLVSLSATV
SNAEEFGDWLDTVRGDTEVIVSEIRPVPLEQHVLVRDDLLPLFDDRAGLATAQVNQELMR
IRSSTASTYDNNRQAQAYRSNRHAGRQAQRPSRGGRRPVRAANARRIERMDRPDVVRLLE
RSNLLPAIFFIFSRVGCDAAVQQVRRSGVRLTSTEERAEIRAIVEDRTRTLQDEDLDVLG
YWEWLDNLERGVASHHAGLLPAFKEVVEELYQRKLVKVVFATETLALGINMPARTVVLEK
MEKFNGEARVAITSGEYTQLTGRAGRRGIDVEGHAVVQWTEGMDPQAVAALASRRTYPLN
SSFRPTYNMAVNLIDMFGKPRARQILESSFAQFQADRAVVGLARQVREAEESLAGYQSAM
ACEHGSFPEYAAIRRELSDLEKKNRQDSQAPRASRDKRMKRIQTLRTQMQRHPCHRCPDR
EAHARWAERYWKLKRQTDRIRRQIETRTGTVARVFDRVVEVLETLDYVTHDGADTTLTDA
GRTMRRIYGERDLLVAESLRQGLWAGLDAPSLAAMACCLVYEPRRDEANSGERGLPRGAF
RTAYEKTTTLWAELDDLEQDHHLPGSEPLAAGLAGAMHAWARGGALDRVLIDADMAAGDF
VRWAKQTIDLLDQLSIVAEDAALARTARSALDGVRRGIVAYSSM
NT seq
2475 nt
NT seq
+upstream
nt +downstream
nt
atgagttcaccttccgagaagtacgcccgggcgcgccaggcggccgagcacccggagtcg
tccgcgttcgccgcgttgcagaagttccagctggatcccttccaggtggcggggtgccac
gcgctggagaacggacgcagcgtgctcgtcgccgcaccgaccggagcaggaaagacgatc
gtcggcgaattcgcgattcacctcgcgatgcagacgccgaccgacaaggcgttctacacg
acacccatgaaggccttgtcgaatcagaagttccgggagctggtcgacgtctacggcgcc
gatcaggtgggactgctcaccggcgacaccaacatcaacggcaatgcgcgcatcgtggtg
atgacgaccgaagtcctgcgcaacatgatctacgccgactccacggcgctccgggatctc
cgttacgtgatcatggacgaggtccactacctcgctgaccgtttccgcggcgccgtctgg
gaagaggtcatcatccacctgcctgcgcaggtgcggctggtctccctgagcgccacggtc
tcgaacgccgaggagttcggggactggctcgacacggtgcgcggcgacaccgaagtgatc
gtctccgagatcaggccggtgccgttggagcagcacgtgctcgtgcgggacgacctgctt
cccctgttcgatgaccgcgccggcctcgccacggcccaggtcaaccaggagttgatgcgc
atccgctcatcgaccgcgtcgacgtatgacaacaaccgacaggcgcaggcgtatcggagc
aatcggcatgcgggccgacaggcgcagcgcccttcccgaggaggccgccgtcccgtccgt
gccgcgaatgcgcgccggatcgaacggatggatcgtccggatgtcgtgcgccttctggag
cgctcgaacctcctcccggcgatcttcttcatcttcagtcgcgtggggtgcgacgcggcc
gtgcagcaggtgcgtcgctccggcgtccgtctgacgtcgacggaggagagagctgagatc
cgggccatcgtcgaggaccgcacccgcaccctccaggacgaagacctcgacgtcctgggc
tactgggagtggctggacaacctcgaacgcggtgtcgcctctcatcacgccggtcttcta
cccgccttcaaggaggtcgtggaagagctgtatcagcgcaagctcgtcaaggtggtgttc
gcgaccgagaccctggctctcggcatcaatatgccggctcgtacggtcgtgctcgagaag
atggagaaattcaacggcgaggcacgcgtcgcgatcacgtcgggggagtacacacagctc
accggtcgcgccggacgccgtggcatcgacgtcgagggccacgccgtcgtgcagtggacc
gaggggatggatccccaggccgtcgctgccctcgcgtcccgacgcacataccccctgaac
tcgagcttccgtccgacgtacaacatggccgtgaatctgatcgacatgttcggcaaaccc
cgagcgcggcagatcctcgagtcgtccttcgcgcagttccaggcggatcgtgccgtcgtc
ggcctcgctcggcaggtgcgcgaagccgaggagtcgctcgccggttatcagagcgcgatg
gcttgtgaacacgggagcttcccggagtacgccgcgatccgccgcgaactgagcgatctc
gagaagaagaaccgccaggactcccaggcgccgcgagcgtcacgggacaagcggatgaag
cgcatccagaccctgcgtacgcagatgcagcgccacccgtgccaccgttgtcctgaccgc
gaggctcatgcccgctgggcggagcgctattggaagctcaagcgccagacagaccggatc
cggcgccagatcgagacacgcaccggaacggtcgcgcgggtgttcgaccgcgtcgtcgag
gtcttggagacactcgactacgtgacgcatgatggcgcggacacgacgctgacggatgcc
ggacgcacgatgcgccgtatctacggcgagcgggatctgctggtggccgagtccctgaga
caggggctctgggcgggcttggatgctccttcgctggcagccatggcctgctgcctcgtg
tacgaaccgcgacgcgatgaagccaattcgggggagcgcggcctgccgcgtggcgcattc
cgcaccgcctacgagaagaccaccacgctctgggctgagttggatgacctggaacaggac
caccatcttcccggcagcgagccgctcgccgccggtctggcgggcgccatgcacgcctgg
gcgcgcgggggagcgctggaccgggtcctgatcgacgccgacatggcagcgggagacttc
gtgcgctgggccaagcagaccatcgatctgctggatcagctctcgatcgtcgcggaggat
gccgcgctggcgcgtaccgcgcggagcgctctcgacggagtccgccgcggcatcgtggcc
tactcgtcgatgtga
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