Microbacterium sp. J1-1: LRQ07_12325
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Entry
LRQ07_12325 CDS
T11495
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
micj Microbacterium sp. J1-1
Brite
KEGG Orthology (KO) [BR:
micj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
micj03019
]
LRQ07_12325 (hrpA)
Enzymes [BR:
micj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
LRQ07_12325 (hrpA)
Messenger RNA biogenesis [BR:
micj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
LRQ07_12325 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
DEAD
HA2_C
AAA_22
AAA_19
nSTAND_NTPase5
T2SSE
ResIII
nSTAND3
SLFN-g3_helicase
NACHT
AAA_30
PhoH
SRP54
WHD_HA2
Zeta_toxin
UvrD-helicase
FtsK_SpoIIIE
AAA_SelU
Motif
Other DBs
NCBI-ProteinID:
UUE19580
LinkDB
All DBs
Position
2567168..2571085
Genome browser
AA seq
1305 aa
AA seq
DB search
MSSPVISYPPELPVSAARAEIADAIRDHQVVIVAGATGSGKTTQLPKIALELGRERIAHT
QPRRLAARTIAERVAEELQVELGTLVGYKVRFTDKVSDATRIALMTDGILLNEIHRDRLL
TRYDTIIIDEAHERSLNVDFLLGYLSRILPERPDLKVVITSATIDPESFAKHFAVADGTP
APIIEVSGRTYPVEIRYRGPSEDPDDDDQAGDPEDEVSAIVSALRELDREAPGDVLVFLP
GEAEIRDAADAVRGAYANDRAPTEVLPLFGRLSAADQHRVFERSRVPGVRRRVILATNVA
ETSLTVPGIKYVIDTGTARISRYSNRSKVQRLPIEAISQASANQRSGRAGRTSDGIAIRL
YSEEDFDRRPEFTEPEILRTSLASVILQMLSLGFGDISAFPFLTPPDSRGVKAAFDLLTE
LGAVEPSRRDGSPHLTRTGREISRMPIDPRFARMLIEAGRTGSGGSVTRDVLAIVSGMTI
QDVRERPEERREEADRQHARFVDPTSDFLTLLNLWNHLREQQRELGSSAFRRLCRSEHLN
YVRVREWFDVHRQLRTLVKTPDRPRDETGTSDPDAIHRALLSGLLSQIGILDERTAPAGK
SRSPAKEPKGRRIAEYRGARGIRFSVFPGSGLRKKSPRAVIAAEIVETSRTFARTVAAID
PAWAEPLAGDLAKRQVTEPHWSKDAGAAVAFEKVTLFGLEIIPRRRVQFARIDRAASREL
FVRHALVEGEWDPTRIDKRVSAFWRSNAELRKRLEKLEERERRRDILAGDEAVFRFYDER
IPAEVFDVRSFESWWRDAMATTPKLLVMRESDLIDDEERADQREFPTRWTQGDQVLGLAY
RFEPGADDDGVSVVVPLPLLAQIEDRGFDWQVPGLRAELVTGLLRALPKTIRRHVVPAAD
WAEKFGAELIEEGPESHGGLPPRTLKEALARRIQPLANQLVSATDFDDERVPPHLRMNFR
AVDERGRIVGSGRDLRALQTRLSDRARSSVARSIAAPPRSGSSGGGRGPERVAAAPVEQT
GLTGWTFGDLPEVLDTRVAGGVVRAYPAIVDQGKSVSVRVESTPEAAAASTRDGVLRLVL
LGVPSPSSYVQEHLTSQEKLALAASPYPSAAGLIEDCRAAVARKAIERVVPDGIVRNEAD
FAMVRDAVSATLVDDLFACVSLVARILTRSRDVERGIKSQNSLALLGPLNDIRTQLSGLL
HAGFVSAAGVDRLAQFPRYLEGMLDRLKTLASEPGKDRARMTEYERMANAFEDAGGTIPL
RRDATPSLVEVRWLLEEYRVSVFAQRLGTAQPVSPQRIMKALSGR
NT seq
3918 nt
NT seq
+upstream
nt +downstream
nt
atgtcctcccctgtgatctcctacccgccggagctgcccgtcagcgcagccagggccgag
atcgccgacgccatccgcgaccaccaggtcgtgatcgtcgcgggtgccaccggatccggc
aagacgacccagctaccgaagatcgccctcgaactcgggcgggagcgcatcgcccacacg
cagccacgccgcctcgcggcccgcaccatcgcagagcgtgtcgccgaagagctccaggtc
gagctcggcaccctggtcggctacaaggtgcgtttcaccgacaaggtctccgatgccacc
cgcatcgcactgatgaccgacggcatcctcctcaacgagatccaccgcgaccgactgctc
acgcgctacgacacgatcatcatcgacgaggcgcacgagcgctccctcaacgtcgatttc
ctcctcggctacctctcacgcatcctccccgagcgccccgacctcaaggtggtcatcacc
tcggcgacgatcgatccggagagcttcgcgaagcacttcgcggtggccgacggcaccccg
gctccgatcatcgaggtgtccgggcgcacctatcccgtggagatccgctaccgcggaccg
tcggaggaccccgacgacgacgatcaggccggcgacccggaggacgaggtgtcggcgatc
gtctcggcgctgcgcgagctcgaccgggaggcgccgggcgacgtgctcgtgttcctgccc
ggcgaagccgagatccgcgacgcggccgacgccgttcgcggcgcctacgcgaacgaccgc
gcccccacggaggtgcttccgctgttcggacgcctctccgccgcagatcagcaccgggtg
ttcgagcgcagtcgggtgcctggcgtgcgccgccgggtgatcctcgcgaccaacgtcgcc
gagacgagtctcaccgttcccggcatcaagtacgtgatcgataccggcaccgcccggatc
tcgcgctacagcaaccgatccaaggtgcagcgcctgccgatcgaggcgatctcgcaggcc
tcggcgaaccagcgctcgggccgcgcgggccgcaccagtgacggcatcgcgatccgcctc
tactcggaggaggacttcgaccggaggccggaattcaccgagcccgagatcctgcggacg
tcactcgcatcggtcatcctgcagatgctctcgctcggcttcggcgacatcagcgccttc
ccgttcctgaccccgcccgactcccgcggtgtgaaggcggcattcgacctgctcaccgag
ctcggcgcagtcgagccctcccgccgtgacggctccccgcacctcacgcgcacggggcgt
gagatctcgcgcatgccgatcgacccgcggttcgcgcggatgctgatcgaggcgggacgc
acgggatcgggcggctcggtcactcgcgacgtgctcgcgatcgtctcaggaatgacgatc
caggacgtgcgcgagcggccggaggagcgccgcgaggaggccgaccgtcagcacgcacgc
ttcgtcgacccgacgagcgacttcctgaccttgctgaacttgtggaatcacctgcgcgag
cagcagcgcgagctcggctcgagtgcgttccgccgactctgccgctccgagcacctcaac
tacgtgcgggtgcgggagtggttcgacgtgcaccgtcaactccgcaccctcgtgaagacc
cccgaccgcccgcgcgacgagaccgggacgagcgaccccgacgccatccatcgcgccctg
ctgtccggcctgctctcgcagatcggcatcctggacgaacgcacggcacccgccggcaag
tcgcgctcccccgcgaaggagccgaaaggccgccgcatcgcggagtatcggggcgcccgc
ggcatccgcttctcggtctttcccgggtcagggctgcgcaagaagagtcctcgcgcggtg
atcgccgccgagatcgtcgagacctcgcgcacgttcgcccgcacggtcgccgcgatcgac
ccggcctgggccgaacccctggcgggcgacctcgccaagcggcaggtcaccgagccccac
tggtcgaaggatgccggggccgcggtcgccttcgagaaggtgacgctgttcgggctcgag
atcatcccgcgacggcgcgtgcagttcgcgcgcatcgaccgggcggcgtcgcgcgaactc
ttcgtacggcatgcgctcgtcgagggcgagtgggatccgacgcgcatcgacaagcgggtg
agtgcgttctggcgcagcaacgccgaactgcgcaaacgcctcgagaagctcgaggagcgt
gagcgccgtcgcgacatcctcgccggcgacgaggccgtgttccggttctacgacgaacgc
atccccgccgaggtgttcgatgtgcgctccttcgagagctggtggcgcgatgccatggct
accacgccgaagctgctcgtgatgcgcgagagcgacctgatagacgacgaggaacgcgcg
gatcagcgcgagttcccgacgcggtggacgcagggcgaccaggtgctcggtctcgcgtac
cggttcgagccgggcgccgacgacgatggcgtcagcgtggtcgttccgttgccgctgctc
gcacagatcgaggaccgcggcttcgactggcaggttccggggctgcgcgccgaactcgtg
acggggctgctgcgcgcgctccccaagacgatccggcgccatgtcgtccccgccgccgac
tgggccgagaagttcggcgccgagctcatcgaggaaggcccggagtcgcacggcggactc
cctccgcgcacgctcaaggaagcgctcgcccgacggatccagccgctcgcgaaccagctt
gtgtccgcgaccgacttcgacgacgagcgggtccctccgcacctgcgcatgaacttccgc
gccgtggacgagcgcgggaggatcgtcggctccggccgcgatctgcgggcgctgcagacg
cgactctccgaccgtgcgcgcagcagcgtcgcccgttcgatcgccgcccctccccgatcc
gggagctccggtggaggtcgcggacccgaacgcgtcgccgcggctccggttgagcagacc
ggactcacggggtggaccttcggagacctgcccgaggtgctcgacacccgggtcgccggc
ggtgtcgtgcgcgcctatcccgccatcgtggaccagggcaagagcgtgtcggtgcgggtc
gagtcgaccccggaggccgctgccgcctccacccgcgacggcgtgctgcgcctggtactg
ctcggtgtgccctcaccctcctcgtatgtgcaggagcacctcacgagtcaggagaagctg
gcactcgccgcctcgccgtacccgtccgccgccggcctcatcgaggactgccgggcggcc
gtcgcccgcaaggcgatcgagcgtgtcgtgccggacgggatcgtgcgcaacgaggcggac
ttcgcgatggtgcgcgacgcggtctcggccacgctcgtcgatgatctcttcgcgtgcgtc
tcgctggtcgcgcgcatcctcacccgatcccgcgacgtcgaacgcggcatcaagtcccag
aattcgctcgcgctgctcggaccgctcaacgacatccgcacccagctgagcggccttctg
catgccggtttcgtctccgccgccggcgtcgaccgtctcgcacagttcccccgctacctg
gaggggatgctcgaccgcctgaagaccctcgccagcgagccggggaaggaccgcgcccgc
atgaccgagtacgagcgcatggcgaacgcgttcgaggacgccggcggcacgatccccctc
cgccgcgacgcgacgccttcgctcgtcgaggtgcgctggctgctggaggagtaccgcgtg
agtgtgttcgcgcagcgcctgggtaccgcgcagccggtgtcgccgcagcgcatcatgaag
gcgctctcgggtcgctga
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