Micrococcus sp. KBS0714: B1A86_00004990
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Entry
B1A86_00004990 CDS
T06141
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mick
Micrococcus sp. KBS0714
Pathway
mick03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mick00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B1A86_00004990
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mick03019
]
B1A86_00004990
03009 Ribosome biogenesis [BR:
mick03009
]
B1A86_00004990
Enzymes [BR:
mick01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
B1A86_00004990
Messenger RNA biogenesis [BR:
mick03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
B1A86_00004990
Ribosome biogenesis [BR:
mick03009
]
Prokaryotic type
rRNA processing factors
B1A86_00004990
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
DnaJ_CXXCXGXG
DUF5351
Motif
Other DBs
NCBI-ProteinID:
QDW17275
UniProt:
A0AAJ3PNL8
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All DBs
Position
1084078..1087443
Genome browser
AA seq
1121 aa
AA seq
DB search
MTSRSPPPGAPVAHGARGNAAGGGRGHAGRRRVWRRRSAGGAAMAANNEDTTRADERVEE
TAEQAVTQTAADTADGAEPERTAASDDAADPAEEPSAPTLQVDPTDPFAVPANLIEVLRT
ETTSRQRSEDEDAGESEDRAEGAVVSRRRRRRRRGEVDMELDGGEAGDPEHTVTRVRAPR
QAVGTASDTVQSVKGSTRLEAKRQRRRDSRSGGRRRTVITEAEFLARREAVDRKMLVRQR
DQRIQIAVLEDGVLAEHFVSHTTQDSMIGNVYLGKVQNVLPSMEAAFVDIGRGRNAVLYA
GEVNWDAAQLDGKPRKIENALKSGDTVLVQVTKDPVGHKGARLTSQVSLPGRYLVYVPGG
SMTGISRKLPDVERSRLKKILKDHLPQDAGVIVRTAAEGTSEQELQNDINRLRAQWEGIQ
EKASGTKVLAPELLYAEPDLTIKTVRDVFNEDFSAMLVQGEATWDNIEAYVTYVAPHLLG
RLHHWVPEDHDGEDLYATHRVDEQLHKALERKVYLPSGGSLVIDRTEAMTVVDVNTGKFT
GSGGNLEETVTKNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLEANRDLVLRRLVECLGR
DRTKHQVAEVTSLGLVQMTRKRMGTGLVEVFSETCEHCAGRGILIQDTPVERGRSGGEQR
GEAEGRRRRRRRGDGEGEHAHAAAATTTGAEHADSEDERQRRERAEAARVALHSIAKASG
KVAEDEAPAQESAPAEQAADAAEDSAAEAVEAASAGPAEAGQPAGTDEEETPRRRRRRGR
RRSRGRAEESGDTGAEDAGSEDAARSHDDGPAESAGQTRQTEEEAAEPAAAAAPEHQDPV
VQAEEAVAAVAEAEADAEAESPEDAAEQDDRPRRSRRRRGGRGRSRRGGEAASTEADADA
EDHGAERATPSRHEAADADSSVAVSSEVASEPVPAEDAPAPVPAEDAPAPRRRRSRRASS
DGVVRPAAGADASAERTADRTDAAPVEATEPSPEESTDATEVHEQPAAPAAVEEAVMVEP
AATEPTAEPTADADQASAADAPTEAQAAPTAPVPGSPRRRSRRAVSSDGVHVQVQAAPGG
AQGGRFTAAVAEASTPAEPQGAAPVMLGVGVKAADLARRGR
NT seq
3366 nt
NT seq
+upstream
nt +downstream
nt
atgacttctcggagtccgcctcccggcgcacccgtggcgcacggcgcccggggcaacgcg
gccggcggcggacgcggacacgccgggcggcggcgagtgtggcgtcgtcggtcggcggga
ggtgctgccatggcggccaacaacgaggacacgacccgcgcagacgaacgcgtggaagag
acggccgagcaggccgtgacgcagaccgcggcggacaccgccgacggggcggagccggag
cggaccgccgcgtccgacgacgccgcggacccggccgaggagccgagcgcgccgacgctg
caggtcgacccgaccgacccgttcgccgtgccggcgaacctgatcgaggtcctgcgcacc
gagaccacgtcccggcagcgctccgaggacgaggacgccggagagtccgaggaccgggcc
gagggcgccgtggtctcccggcggcgccgccgacgccgccgcggtgaggtggacatggag
ctcgacggcggcgaggccggcgatcccgagcacaccgtcacccgcgtgcgcgcgccgcgc
caggccgtcggcaccgcctcggacaccgtccagagcgtcaagggatccacccggctcgag
gcgaagcgccagcgccgccgcgactcccgctcgggcgggcgtcgccgcaccgtgatcacc
gaggccgagttcctggcccgccgcgaggccgtggaccgcaagatgctggtgcgccagcgc
gaccagcgcatccagatcgccgtgctcgaggacggcgtgctggccgagcacttcgtctcg
cacaccacgcaggactcgatgatcggcaacgtgtacctgggcaaggtccagaacgtgctg
ccgtccatggaggccgcgttcgtggacatcggccgcggacgcaacgccgtgctctacgcg
ggcgaggtcaactgggacgccgcccagctggacggcaagccgagaaagatcgagaacgcg
ctcaagtccggcgacaccgtgctcgtccaggtcaccaaggacccggtgggccacaagggc
gcccgtctgaccagccaggtctccctgcccggccgctacctcgtgtacgtgccgggaggc
tcgatgaccggcatctcccgcaagctgccggacgtggagcgctcgcgtctgaagaagatc
ctcaaggaccacctgccgcaggacgccggcgtgatcgtgcgcaccgcggccgagggcacc
tccgagcaggagctgcagaacgacatcaaccgtctgcgcgcccagtgggagggcatccag
gagaaggcgtccggcaccaaggtgctcgcccccgagctgctctacgccgagccggacctg
accatcaagacggtccgcgacgtcttcaacgaggacttctccgccatgctcgtgcagggc
gaggccacgtgggacaacatcgaggcctacgtgacctacgtggccccgcacctgctgggc
cgtctgcaccactgggtgccggaggaccacgacggcgaggacctgtacgccacccaccgc
gtggacgagcagctccacaaggcgctcgagcgcaaggtgtacctgccctccggcggctcg
ctcgtgatcgaccgcaccgaggccatgaccgtggtggacgtgaacaccggcaagttcacg
ggctccggcggcaacctcgaggagaccgtcaccaagaacaacctcgaggccgccgaggag
atcgtccggcagctgcgcctgcgggacatcggcggcatcatcgtcatcgacttcatcgac
atggtgctcgaggccaaccgcgacctcgtgctgcgccgtctcgtggagtgcctgggccgg
gaccgcacgaagcaccaggtcgccgaggtgacctcgctcggcctggtccagatgacgcgc
aagcgcatgggcaccgggctcgtggaggtgttctcggagacctgcgagcactgcgccggc
cgcggcatcctcatccaggacacgccggtcgagcggggccgctccggcggtgagcagcgc
ggcgaggcggagggccgccgtcgtcgccggcgtcggggcgacggcgagggcgagcacgcc
cacgccgccgcggccacgacgacgggcgccgagcacgccgactcggaggacgagcggcag
cgccgtgagcgggccgaggccgcccgggtcgccctgcactcgatcgcgaaggcctccggc
aaggtggccgaggacgaggcccccgcccaggagtccgcccccgccgagcaggcggcggac
gccgccgaggactccgcggccgaggccgtcgaggccgcgtcggccgggcccgcggaggcc
gggcagccggccgggacggacgaggaggagacgccgcgtcgccggcgtcgtcggggccgc
cgccgcagccggggccgcgctgaggagtcgggggacaccggcgccgaggatgccggctcc
gaggatgccgcgcggtcgcacgacgacggccccgccgagtccgccggtcagacccgtcag
accgaggaggaggcggccgagccggccgccgccgcggcccccgagcaccaggacccggtc
gtgcaggccgaggaggccgtggccgccgtcgcggaggcggaggccgacgccgaggccgag
tccccggaagacgcggctgagcaggacgaccgtccccgccggtcccggcgtcgccggggt
ggccgcgggcggtctcgccgaggcggcgaggcggcctcgaccgaggccgacgccgacgcc
gaggaccacggtgcggagcgcgcgacgccgtcgcggcacgaggccgcggacgccgactcc
tcggtggccgtgtcctccgaggtcgcatcggagcctgtgcctgccgaggatgccccggcg
cccgtgcccgccgaggatgccccggcgccccggcgccgccggtcccgccgggcctcgagc
gacggcgtcgtccgtccggccgccggtgcggacgcgtccgccgagcggacggccgaccgc
acggacgcggctccggtggaggccaccgagccctcgcccgaggagtccacggacgccacc
gaggtccacgagcagcccgccgccccggccgccgtcgaggaggccgtgatggtggagcct
gcggcgaccgagccgacggcggagcccacggcggacgcggaccaggcgtccgccgcggac
gccccgaccgaggcccaggcggctccgaccgccccggtgcctggatcgccgcgccggcgc
tcgcgtcgcgccgtgtcgtccgacggcgtccacgtccaggtccaggccgcgcccggcggc
gcccagggcggccgcttcaccgcggccgtggccgaggcgtccacccccgccgagccgcag
ggtgccgccccggtgatgctcggcgtcggagtgaaggccgccgacctggcccgtcgcggc
cgctga
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