Microbulbifer sp. SH-1: GNX18_00200
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Entry
GNX18_00200 CDS
T10373
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
micl Microbulbifer sp. SH-1
Pathway
micl02020
Two-component system
micl02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
micl00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
GNX18_00200
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
GNX18_00200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
micl03021
]
GNX18_00200
Transcription machinery [BR:
micl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
GNX18_00200
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Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_21
Motif
Other DBs
NCBI-ProteinID:
QIL88368
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All DBs
Position
complement(35433..36911)
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AA seq
492 aa
AA seq
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MKQSLQLKLGTSLTMTPQLQQAIRLLQLSTLELQQEIQSALDSNPLLESDFDEHAGEQLQ
EQNTPATIEHQAHDGAESNRESLNGESESSADGDWNSDIPDDLPVDTRWDDIYTNSSHAG
GEGEEYALEQRNAAVESLQDHLLWQLNLTPLTPIDKLIGETLIDAIAPNGFLDINIEDLA
ASLDVDVEEVLAVLKTIQQFEPVGCGSRDLRESLLLQLRQLPENTPWLAQALVVVGQYLD
LLGKRDFRQLSRRTRLSETQLGEVMRLIQTLTPYPGEAFGGEEPQYVVPDVIVSRRDQRW
LVELNPETTPKLRINDAYAALIRRADNSAENNYLRDNLQEARWFLKSLQSRHETLLKVAS
CIVEKQQGFFELGPEAMKPMVLANIAETIGMHESTISRVTTQKYMLTPRGVFELKYFFSS
HVSTDSGEDASSTAIRALIRKLVDAEQPRKPLSDNKITQELDKQGIQVARRTVAKYRESM
GIPSSSERKRLV
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atgaagcagtcactccagttaaaactcggcacttcgctgacaatgacgccgcaactgcaa
caggcgatccgcctgctgcagctgtcgacgctggagctgcaacaggaaatccaatccgcc
ctcgacagcaacccgctgctggaatcggacttcgacgagcacgccggcgagcaactgcag
gagcagaacacccccgctaccattgagcaccaggcccacgatggcgccgaaagcaaccgc
gaaagcctcaacggtgaatccgagtccagcgccgacggcgactggaacagcgatatcccc
gatgacctgccggtagacacccgctgggacgacatttacaccaacagcagtcacgctgga
ggcgagggcgaggaatacgcgctggagcagcgcaacgcggcggtggagagcctgcaggac
cacctgctgtggcagctgaacctcactccactgaccccgatcgacaagctgatcggcgag
accctgatcgacgccattgcacccaatggttttctcgacatcaacatcgaagacctcgca
gcatctttggatgtggacgtggaagaggtgctcgcggtactgaaaaccatccagcagttc
gaaccggtgggctgcggctcccgcgacctgcgcgagagcctgctgctgcaattgcgccag
ttgccggaaaacaccccctggctggcgcaggcgctggtcgtggtaggccagtacctggat
ttattgggcaagcgcgacttccgccagctgagccgtcgcactcgcctcagcgagacccag
ctcggcgaggtgatgcgcctgattcagaccctcaccccctatcccggcgaggccttcggt
ggcgaggaaccgcagtacgtggtgccggatgtgatcgtcagccgccgcgaccagcgttgg
ctggtggagctgaatcccgaaaccacacccaaattgcgcatcaacgacgcctacgccgcg
ctcattcgtcgcgccgacaactctgccgagaacaactacctgcgcgacaatcttcaggag
gcgcgctggttcctgaaaagcctccagagtcgccacgaaaccctgctgaaggtggcaagc
tgcatcgtcgagaaacaacagggctttttcgagctggggcctgaggccatgaagcccatg
gtgctggccaacattgccgagaccatcggtatgcacgagtccaccatctcgcgggtaacc
acacagaagtacatgctcacgccccgcggtgtgttcgaactcaagtatttcttctccagc
cacgtgagcaccgactccggtgaggacgcgtcttccaccgccatccgcgccctgatccgc
aaactggtggacgccgaacagccgcgcaagccgctgtcagacaacaagatcactcaggaa
ctggacaagcagggcatccaggtggcgcgccgcaccgtggccaagtatcgcgagtccatg
ggcataccctcatccagcgagcgcaaacggctggtgtag
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