KEGG   Microbulbifer sp. SH-1: GNX18_00200
Entry
GNX18_00200       CDS       T10373                                 
Name
(GenBank) RNA polymerase factor sigma-54
  KO
K03092  RNA polymerase sigma-54 factor
Organism
micl  Microbulbifer sp. SH-1
Pathway
micl02020  Two-component system
micl02040  Flagellar assembly
Brite
KEGG Orthology (KO) [BR:micl00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    GNX18_00200
 09140 Cellular Processes
  09142 Cell motility
   02040 Flagellar assembly
    GNX18_00200
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:micl03021]
    GNX18_00200
Transcription machinery [BR:micl03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     GNX18_00200
SSDB
Motif
Pfam: Sigma54_DBD Sigma54_CBD Sigma54_AID HTH_21
Other DBs
NCBI-ProteinID: QIL88368
LinkDB
Position
complement(35433..36911)
AA seq 492 aa
MKQSLQLKLGTSLTMTPQLQQAIRLLQLSTLELQQEIQSALDSNPLLESDFDEHAGEQLQ
EQNTPATIEHQAHDGAESNRESLNGESESSADGDWNSDIPDDLPVDTRWDDIYTNSSHAG
GEGEEYALEQRNAAVESLQDHLLWQLNLTPLTPIDKLIGETLIDAIAPNGFLDINIEDLA
ASLDVDVEEVLAVLKTIQQFEPVGCGSRDLRESLLLQLRQLPENTPWLAQALVVVGQYLD
LLGKRDFRQLSRRTRLSETQLGEVMRLIQTLTPYPGEAFGGEEPQYVVPDVIVSRRDQRW
LVELNPETTPKLRINDAYAALIRRADNSAENNYLRDNLQEARWFLKSLQSRHETLLKVAS
CIVEKQQGFFELGPEAMKPMVLANIAETIGMHESTISRVTTQKYMLTPRGVFELKYFFSS
HVSTDSGEDASSTAIRALIRKLVDAEQPRKPLSDNKITQELDKQGIQVARRTVAKYRESM
GIPSSSERKRLV
NT seq 1479 nt   +upstreamnt  +downstreamnt
atgaagcagtcactccagttaaaactcggcacttcgctgacaatgacgccgcaactgcaa
caggcgatccgcctgctgcagctgtcgacgctggagctgcaacaggaaatccaatccgcc
ctcgacagcaacccgctgctggaatcggacttcgacgagcacgccggcgagcaactgcag
gagcagaacacccccgctaccattgagcaccaggcccacgatggcgccgaaagcaaccgc
gaaagcctcaacggtgaatccgagtccagcgccgacggcgactggaacagcgatatcccc
gatgacctgccggtagacacccgctgggacgacatttacaccaacagcagtcacgctgga
ggcgagggcgaggaatacgcgctggagcagcgcaacgcggcggtggagagcctgcaggac
cacctgctgtggcagctgaacctcactccactgaccccgatcgacaagctgatcggcgag
accctgatcgacgccattgcacccaatggttttctcgacatcaacatcgaagacctcgca
gcatctttggatgtggacgtggaagaggtgctcgcggtactgaaaaccatccagcagttc
gaaccggtgggctgcggctcccgcgacctgcgcgagagcctgctgctgcaattgcgccag
ttgccggaaaacaccccctggctggcgcaggcgctggtcgtggtaggccagtacctggat
ttattgggcaagcgcgacttccgccagctgagccgtcgcactcgcctcagcgagacccag
ctcggcgaggtgatgcgcctgattcagaccctcaccccctatcccggcgaggccttcggt
ggcgaggaaccgcagtacgtggtgccggatgtgatcgtcagccgccgcgaccagcgttgg
ctggtggagctgaatcccgaaaccacacccaaattgcgcatcaacgacgcctacgccgcg
ctcattcgtcgcgccgacaactctgccgagaacaactacctgcgcgacaatcttcaggag
gcgcgctggttcctgaaaagcctccagagtcgccacgaaaccctgctgaaggtggcaagc
tgcatcgtcgagaaacaacagggctttttcgagctggggcctgaggccatgaagcccatg
gtgctggccaacattgccgagaccatcggtatgcacgagtccaccatctcgcgggtaacc
acacagaagtacatgctcacgccccgcggtgtgttcgaactcaagtatttcttctccagc
cacgtgagcaccgactccggtgaggacgcgtcttccaccgccatccgcgccctgatccgc
aaactggtggacgccgaacagccgcgcaagccgctgtcagacaacaagatcactcaggaa
ctggacaagcagggcatccaggtggcgcgccgcaccgtggccaagtatcgcgagtccatg
ggcataccctcatccagcgagcgcaaacggctggtgtag

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