Microbulbifer sp. SH-1: GNX18_03665
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Entry
GNX18_03665 CDS
T10373
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
micl Microbulbifer sp. SH-1
Brite
KEGG Orthology (KO) [BR:
micl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
micl03016
]
GNX18_03665
Enzymes [BR:
micl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
GNX18_03665
Transfer RNA biogenesis [BR:
micl03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
GNX18_03665
Prokaryotic type
tRNA splicing ligases
GNX18_03665
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Gam
Motif
Other DBs
NCBI-ProteinID:
QIL88962
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All DBs
Position
818908..820116
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AA seq
402 aa
AA seq
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MPVKMVLNSNAPAGTVPVKIYTNDVENAALQQLKNIAQLPIIHSHVAAMPDVHMGIGATV
GSVIPTVGAIIPAAVGVDIGCGMNAVRTSLHANQLPDNLKALREAIERRVPVGFASHKRI
SAREAAAQRLAAGADLLFAKHPQLLKRLRNPHETWVTQLGTLGGGNHFIEICLDENNRVW
IMLHSGSRGIGNAIGQYFIQLAKRDMEGHMHNLPDRDLAYFSEGNTHFDDYIEAVHWAQE
YARVNRQEMMKLVVNVLQQHLPPFTLESEAINCHHNYVVREQHFGRDVFVTRKGAISAQK
DQLGIIPGSMGARSYIVRGLGNAESFCSCAHGAGRRMSRTAARKRFTREDLEAQTRGVQC
RKDKGVIDEIPAAYKDIDQVMENQRDLVDVVHTLKQVICIKG
NT seq
1209 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtaaaaatggtactcaatagcaatgcgcctgccggtaccgtgccggtaaaaatt
tacacgaacgacgtggaaaacgcggcattgcaacaacttaaaaatattgcccagctgccc
atcatccactcccatgtggcggcgatgccggatgtgcatatgggaatcggggcgacggtc
gggtcggttatccccacggtcggcgccattattccggcggcggtgggtgtggatatcggt
tgcgggatgaacgcggtgcgcacctccctgcatgccaatcagctgccggataatctgaag
gcgctgcgggaggcgatcgagcggcgtgtgccggtaggattcgccagccacaagcggatc
agtgcccgcgaggcggccgcacagaggctggctgctggtgcggatctgttgtttgcgaag
catccgcaattgctgaaaaggctgcgcaatcctcacgaaacctgggtaacccagctgggt
accctggggggcggcaatcactttatcgagatctgtctcgatgaaaacaaccgcgtgtgg
atcatgctgcactccggcagccggggtatcggcaatgccatcggtcagtactttatccag
ttggccaagcgcgatatggaagggcacatgcacaaccttccggatcgcgacctggcgtat
ttcagcgagggcaatacccacttcgacgactacatcgaagcggtgcactgggcccaggaa
tacgcgcgggtgaaccggcaggagatgatgaagctggtggtgaatgtgttgcagcagcac
ctgccgccgtttacgctggaatccgaggcgatcaactgccaccacaattatgtggtgcgg
gagcagcacttcgggcgcgatgtatttgtcacccgcaagggcgcgatcagcgcgcagaaa
gatcagctgggtattattcccggctccatgggggcgcgctcgtacatcgttcgcggcttg
ggcaatgcggaatccttctgctcctgtgcacacggcgcagggcgacgcatgagccgcacg
gcggcgcgcaagcgttttacccgcgaggatctcgaggcccagacccgcggtgtgcagtgc
cgcaaggacaagggtgtgatcgatgagattcccgcggcctacaaagacattgatcaggtc
atggaaaaccagcgcgacctggtggatgtagtgcataccctgaagcaggtgatctgtatc
aaggggtga
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