Microbulbifer sp. SH-1: GNX18_04620
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Entry
GNX18_04620 CDS
T10373
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
micl Microbulbifer sp. SH-1
Pathway
micl03018
RNA degradation
Brite
Enzymes [BR:
micl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
GNX18_04620
Messenger RNA biogenesis [BR:
micl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GNX18_04620
Ribosome biogenesis [BR:
micl03009
]
Prokaryotic type
rRNA processing factors
GNX18_04620
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
QIL89123
UniProt:
A0A6G8DBW1
LinkDB
All DBs
Position
complement(1022716..1025802)
Genome browser
AA seq
1028 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQWLYDLDIENRTREQKKANIYKGKITRVEPSLEAAFVDY
GAERHGFLPLKEISREYFNKQPKDIEGRIKIKDVVKEGMEVIVQVDKEERGNKGAALTTF
ISLAGRYLVLMPNNPRAGGISRRIEGEERSDLRDALSDVEVPSGMGIIVRTAGVGRSGEE
LQWDLNYLLQLWTAIKKEADEAKAPHFLFQESNVIIRAIRDYMRDDIGEVIVDEEGAYQL
AAEFARQVMPNYANKVKYYEDNIPLFNRYQIESQIETAFEREVKLPSGGSIVIDVTEALV
SIDINSSRATKGGDIEETARAINLEAADEIARQLRLRDMGGLVVIDFIDMQNKSNQREVE
KRMEKALGMDRARVQVGRISRFGLLEMSRQRLRPSLGETTFRVCPRCSGQGTIRGTKSLA
LSILRLVEEEAKKERSAEIRAITPVNVATYLLNEKRKAISNIEARNHTRVVVVPNADLET
PHFEVLRLRDDDSTTVETSYKISGTIEETVNKNREEEPLRAPVAQPAVQQIAHTAPAPTP
VAKPKPKSETPAEPGLFSRLISAIAALFSSSEEKESDSKHKKAKGRGKNYQQQRNRNNQR
GGRGRGRGSRGGRRDDQTGDEREERKSDNRSRRGDRNRDDSAAAERRQDSAETSRDTSRD
TSRDSAQDSRDGQRDGQRRSRRRRGGDRGDRREQQPNVAEAENTSLENEAQASDSDQDQQ
RPARRPSNVRGRPQPRRRGRRGETADTSDNAERAESQESADSEQQELNREVNEAIDTAER
ETAVRPARAEKSAADSESPRKRDPWSDSKPQISADSAVEAPEVKAPEVKAPEEKSEVKPA
AEPAERPVKAEATVETRDTHTAQQPIVSEEAAPEAVSAEVQPAEETAPKAEQAAAAPAEA
ETAEVVETEEAGEVEAETVETKQTEPAVSTAAAETKATAEEPATAEVTPVATARQPGRAG
NDPRINPKPLIDFTVVTARPAIGELRPLDTAQPAEIAHKPRPLQRPANDPRVKRDVAEEN
GSGSAEAG
NT seq
3087 nt
NT seq
+upstream
nt +downstream
nt
atgaagagaatgctgatcaacgcaacccagcccgaagagctgcgcgttgcactggtcgac
ggccaatggctgtacgacctggatattgaaaaccgcacccgcgaacagaaaaaagccaac
atctacaagggtaagatcacccgtgtagaaccctctcttgaagccgccttcgtcgactac
ggtgctgagcgccacggcttccttccgcttaaagaaatttcccgcgaatacttcaacaaa
cagcccaaagacatcgaaggccgcatcaagatcaaggatgtggtcaaagagggtatggaa
gtcatagtccaggtggacaaggaagagcgcggcaacaagggcgcagccctgaccactttt
atcagcctcgccggccgctacctggtactgatgcccaacaacccgcgcgcaggcggtatc
tcccgccgcatcgaaggtgaagagcgcagcgatctgcgcgacgccctgtccgatgtggaa
gtcccctccggcatgggcatcatcgtgcgcacagccggcgttggccgcagcggcgaagaa
ctgcagtgggacctcaactacctgctgcaactgtggaccgccatcaaaaaagaagccgac
gaagccaaggcaccgcacttcctgttccaggaaagcaacgtcatcatccgcgccatccgc
gactacatgcgcgatgacatcggcgaagtgatcgtcgatgaggaaggcgcctaccagctg
gccgccgagttcgcccgtcaggtgatgccgaactacgccaacaaggtgaagtactacgaa
gacaacatcccgctgttcaatcgctaccagattgaaagccagatcgagaccgcgttcgag
cgcgaagtgaagctgccctctggtggctccatcgttatcgacgtcaccgaagcgctggtc
tctatcgacatcaactcctcccgcgccaccaaaggcggtgacattgaggaaaccgcgcgc
gccatcaacctggaagccgcggacgagatcgcccgccagctgcgcttgcgcgacatgggc
ggcctggtggtcatcgacttcatcgacatgcagaacaagtccaaccagcgcgaagtcgaa
aagcgcatggaaaaggccctcggcatggaccgcgcccgggtacaggtaggccgtatctcc
cgtttcggcctgttggaaatgtcccgccagcgcctgcgcccgtccctgggtgaaaccacc
ttccgcgtctgcccccgctgtagcggccaaggcaccattcgcggcaccaaatccctcgcc
ctgtccatcctgcggctggtggaagaggaagccaagaaagagcgcagcgcagagattcgc
gcgatcactccggtgaacgtcgcaacttacctgctcaatgaaaaacgcaaggccatctcc
aacatcgaagcccgcaaccacactcgcgtggtggtggtgccaaacgccgatctggagacc
ccacacttcgaagtgctgcgcctgcgcgatgacgattccacaaccgttgagacctcctac
aagatctcaggcaccatcgaggaaaccgtcaacaagaaccgggaagaagagcccctgcgc
gcgccggttgcccagcctgctgtacagcagatcgcacacacggcgccggcaccaactcct
gtggccaagcccaagccgaaaagcgagacgccagccgagcctggactgttcagccgcctg
atcagcgccatcgccgcactgtttagcagctctgaagagaaagagtccgacagcaaacac
aaaaaagccaaaggtcgcggcaaaaattaccagcagcagcgcaaccgcaacaaccagcgc
ggtggtcgcggacgcggccgcggaagtcgtggcggccgtcgcgatgaccagactggcgat
gagcgcgaagagcggaaatctgacaaccgctcgcgtcgcggcgacagaaaccgcgacgac
agtgcggccgccgagcgccgccaggacagcgccgaaacctcacgtgacacttctcgcgac
acatctcgtgacagcgcccaggacagccgcgacggccaacgtgatggccagcgccgcagc
cgcagacgccgcggaggcgaccgcggtgatcgccgcgaacagcaaccgaacgtggcggaa
gctgaaaacaccagccttgaaaacgaagcgcaagcatcggattcagaccaggaccagcag
cgcccagcgcgtcgcccaagcaatgtgcgcggacgaccgcaaccccgccgtcgcggtcgt
cgcggagaaaccgccgataccagcgacaatgcggaaagagccgaaagccaggaaagcgct
gacagcgagcagcaggagctgaatcgcgaagtcaatgaagccattgatacagcggagcgc
gaaacggccgtcaggcctgcgcgcgcggaaaaatctgccgccgacagcgaaagcccgcgc
aagcgcgatccctggtccgacagcaaaccgcagatatccgctgattcagcagtggaagcg
ccagaggtgaaggctcctgaggtcaaagctcctgaggagaaatccgaagttaaacctgct
gccgagccggccgaacgcccggtaaaagcggaggccacagtcgaaacccgcgacacgcac
actgcacaacagcccatagtgtccgaggaagcggcgccggaagcggtcagcgcggaagta
cagccagccgaggaaactgcgcccaaagccgaacaggctgcggcagcccctgccgaagcc
gaaaccgcagaagtggttgaaacggaagaagctggggaagtcgaggcggaaacggtagaa
accaaacagactgaacccgcggtgagcacagcggcagctgagacaaaagcgactgcggaa
gagccagcaaccgctgaggtcacccctgtcgctaccgcgcgccagcccggccgtgcgggg
aacgatccgcgtatcaaccccaaaccgctgattgatttcaccgtcgttaccgcgcgcccg
gcaatcggcgaactgcgcccgctggacaccgctcaaccggcagagattgcccataagcca
cgccccctgcagcgccccgccaatgacccccgtgtcaaacgcgatgtagcagaggaaaat
ggttccggctccgccgaagctggctga
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