Microbulbifer sp. SH-1: GNX18_08840
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Entry
GNX18_08840 CDS
T10373
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
micl Microbulbifer sp. SH-1
Pathway
micl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
micl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GNX18_08840
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
micl03019
]
GNX18_08840
03009 Ribosome biogenesis [BR:
micl03009
]
GNX18_08840
Enzymes [BR:
micl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GNX18_08840
Messenger RNA biogenesis [BR:
micl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GNX18_08840
Ribosome biogenesis [BR:
micl03009
]
Prokaryotic type
rRNA helicases
GNX18_08840
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QIL89844
LinkDB
All DBs
Position
complement(2067704..2069467)
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AA seq
587 aa
AA seq
DB search
MTDYSEATGFDQLGLPTEILQAVTKLGYETPSPIQAQTIPSLLQGRDVLGQAQTGTGKTA
AFALPLLAGLDLRDKRPQALVLAPTRELAIQVAEACQSYAANLKGFHVAPIYGGADYRGQ
IQQLKRGVQLIVGTPGRVMDHMRKGTLDLSSLKMLVLDEADEMLRMGFIDDVKWVLEQIP
EERQIALFSATMPREVASIAREHLRNPVEVKIKVKTETAETIRQRYWPVGGLHKMDALTR
ILEAEPVDATIIFVRTKNATVEVADKLAARGFASAALNGDMAQGMREQVIEKLKAGKLDI
VVATDVAARGLDVKRISHVINYDIPYDTEAYIHRIGRTGRAGREGDAILFVAPREQRMLR
TIERATKKPIERLDLPTAAAVNASRMEKFRQKITYTMAGRRDLAPFRDLVEKYLEENDID
PLDVAAALAAMAQGDQPLLLDEREPKRQEFNDRRDRDGDFEDRKRNKFDKRGGFDKDSKR
IPAPDEGKERYRIEVGREHGVRPGSIVGAIANEVDLDSSYIGRIEIYPDYTTVDLPEGMP
QEIFQHLKKVRVNGRPMNIARFDEARVKSGGKTAPAFKKRKPKPARD
NT seq
1764 nt
NT seq
+upstream
nt +downstream
nt
atgaccgattactccgaagccactggttttgaccagttgggcctgccgaccgaaattctc
caagctgtaaccaaactcggctacgaaaccccgagcccgatccaggcacagactatcccg
tcgctgctgcaaggccgcgatgtactgggccaggcccagactggtaccggcaagaccgcc
gcgttcgcgctgccgctgctggcagggctcgatctccgcgacaagcgcccacaagcgctg
gtgctggcgccaacccgcgaactggccatccaggtggccgaggcctgccagtcttacgcg
gccaacctcaagggtttccacgttgcgcctatttatggcggcgcggactaccgcggccag
atccagcaactgaagcgtggcgtgcagctgattgtgggtaccccgggccgggtaatggac
cacatgcgcaagggcaccctggacctgtcctccctgaaaatgctggtactggatgaagcc
gacgaaatgctgcgcatgggctttatcgacgatgtgaagtgggtactggagcagattccg
gaagagcgccagattgcgctgttctccgccactatgccgcgagaggtcgcgtcgattgcc
cgtgagcacctgcgcaatccggtggaagtgaagatcaaggtcaagaccgaaaccgccgag
actatccgccagcgttactggccggtaggcggcctgcacaagatggacgcgctgacccgt
attctcgaagccgagccggtggatgccaccatcatcttcgtgcgcaccaaaaacgctacc
gtggaagtggccgacaagctcgccgcgcgcggctttgccagcgccgccctgaacggggac
atggcccagggcatgcgcgaacaggtaattgaaaaactgaaggcgggcaagctcgacatc
gtggtggccaccgatgtggctgcgcgtggtctggatgtgaagcgcatcagccacgtaatc
aactacgacattccctacgatacggaagcttatatccaccgtatcggccgtaccggccgc
gccgggcgcgaaggcgatgcgatcctgtttgtggcaccgcgcgagcagcgcatgctgcgc
accatcgagcgcgccaccaagaagccgatcgagcgcctggacctgcccaccgcggccgcg
gtaaatgcttcgcgcatggaaaaattccgccagaagatcacctacaccatggctggccgc
cgcgacctggcgccgttccgcgacctggtggaaaagtatctggaagaaaacgatatcgat
ccgttggatgtcgccgcggcactggcggccatggcacagggcgaccagccgctgctgctg
gacgagcgcgagccgaagcgtcaggaattcaatgaccgacgggatcgcgatggcgatttc
gaagaccgcaaacgcaacaagtttgataagcggggcgggttcgacaaagacagtaagcgg
attcctgcgcccgacgagggtaaagagcgctaccgcattgaagtggggcgcgaacacggc
gtgcgcccgggtagtattgtcggcgctattgccaacgaagtggatctcgacagttcctat
atcgggcgcattgagatttatcccgattacaccaccgtcgacctgccggaaggcatgcca
caggaaattttccagcacctgaaaaaagtgcgggtaaatggccggccaatgaacatcgcc
cgctttgatgaagcgcgggtgaaatccggtggcaagaccgcgcctgcgttcaagaagcgc
aagccgaaacccgcgcgggattga
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