Microbulbifer sp. SH-1: GNX18_09465
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Entry
GNX18_09465 CDS
T10373
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
micl Microbulbifer sp. SH-1
Pathway
micl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
micl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GNX18_09465 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
micl03019
]
GNX18_09465 (pnp)
03016 Transfer RNA biogenesis [BR:
micl03016
]
GNX18_09465 (pnp)
Enzymes [BR:
micl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
GNX18_09465 (pnp)
Messenger RNA biogenesis [BR:
micl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
GNX18_09465 (pnp)
Transfer RNA biogenesis [BR:
micl03016
]
Prokaryotic type
tRNA degradation factors
GNX18_09465 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
KH_2
S1_RRP5
KH-I_KHDC4-BBP
OB_RRP5_4th
S1_2
KH_NusA_2nd
DUF3016
Motif
Other DBs
NCBI-ProteinID:
QIL89958
LinkDB
All DBs
Position
complement(2213609..2215717)
Genome browser
AA seq
702 aa
AA seq
DB search
MNPVTKTFQYGKDQVTIETGRIARQATGAALVTMGETVVLCTVVGAKDAKAGQDFFPLSV
HYQEKAYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPKGFMNEVQVMITVLSAE
KDVDPDIASMIGTSAALSISGIPFNGPIGAARVGYTEKDGYLLNPRYSQLKTSELDMVVA
GTKDAVLMVESEAAELPEDIMLGAVLYAHQEMQAVVKVCEELKAEAGKPTWDWQPEAVNE
ELKSALETQFGEQVKEAYRITNKQQRTTRLGELRNAAAAELATEEVDEGTVKTYFGKLEK
KIVRGAVVRGEPRIDGRDTKTVRPISVEVGVLPKSHGSALFTRGETQALVVATLGATRDA
QIIDALEGERKDYFMLHYNFPPYSVGEAGRVGATGRREIGHGRLARRGIAAVLPNPESFP
YTLRVVSEITESNGSSSMASVCGSSLALMDAGVPLKAPVAGIAMGLVKEDDGFAVLTDIL
GDEDHLGDMDFKVAGTASGVTALQMDIKIEGITEEIMETALEQALQARLHILAEMNKVIG
ASREVVNENAPRYATLKIHPDKIRDVIGKGGATIRSITEETGASIDIEDDGTVKVFGEDG
VSLEAAVTRIEEITAEAEIGAIYEGKVVRIVDFGAFVNFLPGKDGLVHISQIAEERVNAV
TDYLSEGQMVKVKVLDVDQRGRIKLSIKEATADQAEEATGEE
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
gtgaatccagtaaccaaaaccttccagtacgggaaagaccaggtcaccatcgaaaccggc
cgcatcgcgcgccaggctaccggtgcggcgcttgtcaccatgggcgaaaccgttgttctt
tgtaccgttgtcggtgccaaagacgccaaagccggtcaggactttttcccgctgtctgta
cattaccaagagaaggcctacgcggccggtaaaattcccggtggcttcttcaagcgtgaa
ggccgcccgtcggaaaaagaaacactgacttcccgcctgatcgatcgtccgatccgtccg
ctgttcccgaaaggtttcatgaacgaagtacaggtgatgatcaccgtgctgtccgcggaa
aaagacgtggatccggatattgccagcatgattggtacctcagcggctctgtcgatctcc
ggcattccgttcaatggcccgatcggcgctgcgcgcgtcggctacaccgaaaaagacggt
tacctgctgaacccgcgttacagccaactgaaaacgtccgagctggacatggttgtcgct
ggtaccaaagacgccgtgctgatggtggaatccgaagcggctgagctgccggaagacatc
atgctgggcgcagtgctgtatgcccaccaggaaatgcaggcggtagttaaagtctgtgaa
gagctgaaagccgaagcgggcaaacccacttgggactggcaacctgaagcggttaacgaa
gagctgaagtccgcactggaaacccagttcggcgagcaggtgaaagaagcctatcgcatc
accaacaagcagcagcgcaccacccgtctgggcgaactgcgcaatgccgccgcggctgaa
ctggccaccgaagaagtggatgagggcaccgtaaaaacctacttcggcaagctggagaag
aaaatcgtgcgcggtgccgtggtacgcggcgagccccgtatcgacggccgcgacaccaag
accgtgcgcccgatcagcgtggaagtgggcgtgctgccaaaaagccacggctccgcgctg
ttcacccgcggtgagacccaggctctggtagttgctaccctcggcgccacccgcgatgcg
cagatcatcgacgcgctggaaggcgagcgcaaagactactttatgttgcactacaacttc
cctccctattctgtgggtgaggcgggtcgtgtaggtgctaccggtcgccgcgaaatcggc
cacggccgtctggcccgccgcggcattgctgcagttctgccgaacccggaatcgttcccc
tacaccctgcgcgtggtttccgagatcaccgaatccaacggttccagctcaatggcgtct
gtatgtggctccagtctggcgctgatggacgcgggtgttccgctgaaggcaccggttgcc
ggtattgccatgggtctggtgaaggaagacgacggctttgccgttctgaccgatatcctg
ggtgacgaagaccacctgggcgacatggacttcaaagtggccggtaccgcgagcggcgta
accgcgctgcagatggacatcaagatcgaaggcatcaccgaagaaatcatggagactgcc
ttggagcaggctctgcaggctcgcctgcacatcctcgcggaaatgaacaaggtgatcggc
gcttcccgtgaagtggtcaatgaaaatgccccgcgctacgcgactctgaagatccatccg
gacaagatccgcgacgtgatcggtaaaggcggtgcgaccatccgctccattaccgaagag
acaggtgcttccatcgatatcgaagacgatggcactgtaaaagtcttcggtgaagacggt
gtgagcctggaagcggcggttacccgtatcgaggaaatcaccgcggaagccgagattggc
gcgatctacgaaggtaaggttgtgcgcattgtcgacttcggtgcgttcgtcaacttcctg
ccgggtaaagacggactggtgcacatctcccagatcgcggaagagcgtgtcaacgcagtg
accgactacctgagcgaaggccagatggtcaaggtcaaggtgctggacgtagaccagcgt
ggccgcattaagctgtccatcaaggaagccactgccgatcaggcagaagaggcaaccggc
gaggagtaa
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