Microbulbifer sp. SH-1: GNX18_10095
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Entry
GNX18_10095 CDS
T10373
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
micl Microbulbifer sp. SH-1
Pathway
micl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
micl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GNX18_10095 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
micl03019
]
GNX18_10095 (rnr)
03016 Transfer RNA biogenesis [BR:
micl03016
]
GNX18_10095 (rnr)
Enzymes [BR:
micl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
GNX18_10095 (rnr)
Messenger RNA biogenesis [BR:
micl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GNX18_10095 (rnr)
Transfer RNA biogenesis [BR:
micl03016
]
Prokaryotic type
tRNA degradation factors
GNX18_10095 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
S1_RRP5
Motif
Other DBs
NCBI-ProteinID:
QIL90066
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All DBs
Position
2382524..2384797
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AA seq
757 aa
AA seq
DB search
MSKSPIATFNPLDSEKYSNPIPAREFIMSLLEKNRKMLDREQLAKVLHLSGDEQKEALRR
RLRAMERDGQIQFDRRRGYSLIKPEDLVSGRVIGHPDGFGFLSSDDAAEDLFLSDNEMLT
VFDGDVVQARISGEDRRGRKTGVIVRVLERKTTHLVGRLQCEDGDYFLQPENARIAHEID
VDREHLLGAKPGQYVYVEIIDYPSHRYNAFGRVTELLGDAMGAGMEIDVAIRSHEIPHRW
PQDALRAARQLGSEVPEADKRHRADLRTLPFVTIDGEDAKDFDDAVFCEQTASGNWRLLV
AIADVSHYVAPDSALDQEAQTRATSVYFPGRVVPMLPESLSNGLCSLNPRVDRLVMVCEM
TITRAGKMTGYTFSEGVIHSHARLTYNQVNAFLNSPESNLGRQTARQLKDLAPHIHALHQ
LYSALKMSRAKRGAMDFEKPEVQFKFNEDRKIEKILPVIRNDAHKMIEEFMLSANVATAD
FLKQQKMPALYRVHDGPRDKKLTALRAFLGEKGLKLAGGNKPSPAHYDQLLGSIGQRADA
QTIRTMMLRSLSQAEYSPENRGHFGLAYPAYAHFTSPIRRYPDLLVHRAIRSVIRQKIPH
NPVRRALQRVFGTGGASVQRFGNAAPIAPEKSYPYDKSAMQTLAEHCSNASRRADKASWD
VEAWLKCEYMQGFVGDTFDGHVSSVTNFGLFIELDTVQVEGLIHISALTKDYYQFDAARQ
RLVGERGNGSFAIGDAIRVRVVRVDMERRKIELALAG
NT seq
2274 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaatccccaatcgctacctttaatccgctggattccgaaaagtacagcaaccct
attcccgcgcgcgagttcattatgagcttgcttgaaaaaaaccggaaaatgctcgatcgc
gagcaactggcgaaagtcctgcatctctccggtgatgaacaaaaagaagcgttgcgtcgc
cgcctgcgcgccatggagcgcgatggacagatccagtttgatcgccgccgcggatacagc
ctgatcaagccggaagatctggtcagtggtcgtgttatcggccacccggatggtttcggt
ttcctgagcagtgacgacgcagcggaagatctctttctttccgacaacgaaatgctgacc
gttttcgacggtgacgtggttcaggcgcgcatcagcggcgaggaccgccgcggccgcaag
accggcgtgatcgttcgagtactggaacgcaagaccactcatctggtgggacgcctgcag
tgcgaggatggcgattattttctgcagccggaaaatgcccgcatcgcccatgagatcgat
gtcgatcgcgagcacttactgggtgccaaacccggccaatatgtttacgtggaaatcatc
gactaccccagccaccgctacaatgccttcggccgcgtgaccgagctgctgggggatgcc
atgggcgctggcatggagatcgatgtggcgatccgcagccacgaaattccccatcgctgg
ccacaggatgccctgcgcgcggcgcgccagctgggcagtgaggtcccggaggccgacaag
cggcatcgcgccgacttgcgcacgctgccgtttgtgaccatcgacggcgaggatgccaag
gatttcgacgatgccgttttctgtgaacaaacggcgtccggaaactggcgcctgctggtg
gcgattgcggatgtttcccactatgttgcgccggacagtgcgcttgaccaggaagcgcaa
acgcgcgcgacctccgtgtattttcccggccgtgttgtgccgatgttgccggaatccctg
tccaatggcctgtgctcgctcaacccgcgggtggatcgcctggtgatggtgtgcgagatg
acgatcaccagagcgggaaaaatgaccggttataccttctcggaaggtgtaatccactcc
catgcgcgccttacctacaaccaggtaaacgcgttcctgaattcgccggagtccaattta
ggccggcagactgcgcgccagctgaaagacctggcgccgcatattcacgcgctgcaccag
ctgtattcggcattgaaaatgtcccgcgcaaaacgcggcgcgatggattttgaaaagccg
gaagtgcagttcaaattcaacgaagatcgcaagatagaaaagatactcccggtcatccgc
aacgacgcgcacaagatgatcgaggagtttatgctgagtgccaatgtggccacggcggac
ttcctcaagcaacagaaaatgcccgcactctaccgggtgcacgacggccccagggataaa
aaactcaccgcgctgcgcgcattcctcggcgagaaaggactcaaactggccggcggcaac
aaaccctcgccggcgcactacgaccagctgctgggcagcattggccagcgcgccgatgcg
caaaccatccgcaccatgatgctgcgatccctcagccaggcggagtacagcccggagaac
cggggccactttggtctggcgtatcccgcctatgcgcactttacctcgcccattcgccgc
tacccggatctgctggtgcacagggccattcgctccgtgatccgtcagaagataccgcac
aatcctgtgcgccgtgcactgcaacgcgtcttcggtacgggcggtgcatcggtgcaacgt
ttcgggaatgccgcgcccatcgcgccggaaaaaagttacccctatgacaagtccgccatg
cagacgctcgcggagcattgctccaatgcgtcgcgccgcgctgacaaggcgagctgggat
gtggaggcctggctgaagtgcgagtacatgcagggttttgtcggcgataccttcgacgga
cacgtcagcagtgtcaccaacttcggtctgtttatcgaactcgataccgttcaggtggaa
ggcctgatacatatctcggcactaacgaaggactattaccagtttgatgccgccaggcaa
cgcctggtgggcgagcgcggcaacggcagctttgccattggcgatgcgattcgggtacgc
gttgtgcgcgtcgacatggaacgacgcaaaattgagttggcgctggccggctaa
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