Microbulbifer sp. SH-1: GNX18_17950
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Entry
GNX18_17950 CDS
T10373
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
micl Microbulbifer sp. SH-1
Pathway
micl03020
RNA polymerase
Brite
Enzymes [BR:
micl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GNX18_17950 (rpoC)
Transcription machinery [BR:
micl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GNX18_17950 (rpoC)
DNA repair and recombination proteins [BR:
micl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GNX18_17950 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
QIL91451
UniProt:
A0A6G8DI63
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All DBs
Position
4370683..4374912
Genome browser
AA seq
1409 aa
AA seq
DB search
MKDLLNLVKAQDQLEEFDAIRIGLASPDMIRSWSYGEVKKPETINYRTFKPEREGLFCAK
IFGPVKDYECLCGKYKRMKHRGIICEKCGVEVTKAKVRRERMGHIELASPVAHIWFLKSL
PSRIGLLLDMTLRDIERVLYFESYVVTDPGMTTLERGQLLNDEQYFEAMEEFADEFEAKM
GAEAIQELMNDIDLPSEIQRLREEIPSTNSETKIKKLSKRLKLLEAFYKSGNKPEWMVMQ
ALPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELNAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPT
LRLHQCGLPKKMALELFKPFIFGKLEARGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTIEAQLES
RALMMSTNNILSPANGEPIIVPSQDVVLGLYWMTRERVNDKGEGMFFTDIKEVSRAFYAK
QVGLQAKVKVRIDEVEIGEDGEKRKTRTVYDTTVGRALLWNIVPDGMPFDMVNQPMKKKA
ISRVLNECYRKVGLKATVIFADQLMYTGFDFSTKSGSSIGVNDFEIPAAKADLIASAEEE
VKEIESQFASGLVTAGEKYNKVIDVWSRTNDKVTQAMMAGIRKEKVINKAGEETEQDSFN
SVYMYADSGARGSEAQIRQLAGMRGLMARPDGSIIENAITANFREGLSVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDVVITEIDCGTDEGLTMAPVIEGGDVIESLGDRIL
GRVVARDVPKPGSDEIAVPAGTMIDEAWVERIEGMGIDEVIVRSAITCETGHGICAQCYG
RDLARGHRANPGEAVGVVAAQSIGEPGTQLTMRTFHIGGAASRASAADSIQVKLGGTVRL
HNVKTVKAANGNLVAVSRSGELALADSAGRERERYKLPYGAQISVDEGAEVEGGKIVAKW
DPHTHPIITEVAGWVKLSGMEDGLSIRKQTDEITGLSSIEVIDPAERPAAGKDLRPAVTL
VDENGEELTLASSSAPAHYALPPRAILSLKEGDKVNVGDVIARIPQESGGTKDITGGLPR
VADLFEARKPKEPSILAEISGTVSFGKETKGKVRLQITPKDGKPLANGKDSYEVLIPKHR
QLTVFEGETVEKGEVISDGPSNPHDILRLKGVEELARYITNEIQEVYRLQGVKINDKHIE
TIVRQMLRKVEILEMGDSEFIKGEQVEYQAVIEENERLRAEGKQPAQYERLLLGITKASL
ATESFLSAASFQETTRVLTEAAVTGKEDSLRGLKENVVVGRLIPAGTGLAYHAERKRKRT
QQVSFGYAEGPSAEEVEAALTEALKSSGE
NT seq
4230 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagatttgttaaacctggtgaaagcccaggatcagctggaagaatttgacgcgatc
cgtatcggtctggcatccccggacatgatccgctcctggtcctacggcgaagtgaaaaag
ccggagaccatcaactaccgtaccttcaagccggaacgcgaaggcctgttctgcgccaag
atctttggcccggtcaaggactacgagtgcctgtgcggtaagtacaagcgcatgaagcac
cgcggcatcatctgcgaaaagtgcggcgtggaagtgaccaaggccaaggtgcgccgcgag
cgcatgggccacatcgaactggcatcgccggttgcgcacatctggtttttgaaatcgttg
ccgtcccgtatcggtctgctgctggacatgaccctgcgcgacatcgagcgcgtgctctac
ttcgaatcctacgtagtgaccgatccgggtatgactaccctggagcgcggtcagctgctg
aacgacgagcagtacttcgaggcgatggaagagttcgccgacgagttcgaagccaaaatg
ggtgcggaagccatccaggaactgatgaacgatatcgacctgccgtctgaaattcagcgt
ctgcgggaagagattccgtccaccaattccgagaccaagatcaagaaactgtccaagcgc
ctgaagctgctggaagccttctacaagtccggcaacaagccggagtggatggttatgcag
gcgctgccggtgctgccgccggacctgcgtccgctggtacccctggacggcggtcgtttt
gcgacctccgacctgaacgatctgtaccgccgcgtgatcaaccgcaacaaccgtctgaag
cgcctgctcgagctgaacgcgccggatatcatcgtgcgcaacgaaaagcgcatgctgcag
gaggcggtagacgccctgttggataacggtcgtcgcggtcgcgccatcaccggttccaac
aagcgcccgctgaaatccctggccgacatgatcaagggtaaacagggtcgtttccgtcag
aacctgctgggcaagcgcgttgactactccggtcgttccgtgatcgtggtaggtccgacc
ctgcgtctgcaccagtgcggtctgccgaagaaaatggcccttgagctgttcaagccgttc
attttcggcaaactggaagcccgcggcctcgccaccaccatcaaggcggcgaagaaaatg
gtcgagcgcgaagaagcggtggtgtgggatatcctcgacgaggtgatccgcgagcacccg
gtactgctgaaccgcgccccgaccctgcaccgtctgggtatccaggcgttcgagccggta
ctgattgaaggtaaagcgatccagctgcacccgctggtgtgtgcggcgtacaacgccgac
ttcgacggtgaccagatggcggtacacgtaccgctgaccatcgaggcgcagctggaatcc
cgcgcgctgatgatgtccaccaacaacatcctgtcgcccgccaacggcgagccgatcatc
gtgccttcccaggacgtggtactgggtctgtactggatgacccgcgagcgcgtgaacgat
aaaggtgaaggcatgttcttcaccgatatcaaggaagtgagccgcgccttctacgccaag
caggttggcctgcaggcgaaggtgaaagtgcgtatcgacgaagtggaaatcggcgaagac
ggcgagaagcgcaagacccgcaccgtgtacgacaccactgtcggccgcgcgctgctgtgg
aacattgtgccggacggtatgcccttcgacatggtcaaccagcccatgaagaagaaggcg
atttcccgcgttctgaacgagtgttaccgcaaggtgggcctgaaggcgaccgttatcttt
gctgaccagctgatgtacaccggtttcgacttctccaccaagtccggttcctccatcggt
gtgaacgacttcgagatcccggcggccaaggccgacctgatcgcttccgcggaagaggaa
gtgaaagagatcgagagccagttcgcctccggtctggtaaccgcgggcgagaaatacaac
aaggttatcgacgtgtggtcccgtaccaacgacaaggttacccaggcaatgatggccggc
atccgcaaggaaaaggtcatcaacaaggccggtgaggaaaccgaacaggactccttcaac
tccgtgtacatgtacgccgactccggcgcgcggggttccgaggcgcagatccgtcagctc
gccggtatgcgcggcctgatggcgcgtccggacggctccattatcgaaaacgccattact
gcgaacttccgtgaaggtctgagcgtactgcagtacttcatctccactcacggtgcgcgt
aaaggtctggcggataccgcactgaaaaccgcgaactccggttacctgacccgccgtctg
gtggacgtggcccaggacgtggtgatcaccgagatcgactgtggcaccgacgaaggtctg
accatggcgccggtgatcgaaggcggtgacgtgatcgaatctctgggtgaccgtattctc
ggccgtgtcgtggcccgcgacgtgcccaagcccggcagcgacgagatcgcggtaccggcc
ggcaccatgatcgacgaagcgtgggtagagcgcatcgaaggtatgggtatcgacgaggtg
atcgtgcgttccgcgatcacctgtgaaaccggccacggtatctgcgcccagtgttacggt
cgcgacctggcccgcggccaccgcgccaacccgggtgaagccgtgggtgttgtcgcggcg
cagtccatcggtgagccgggtacccagctgaccatgcggaccttccacatcggtggtgcg
gctagccgtgcttccgcggcggacagcattcaggtgaagctgggcggtaccgtacgtctg
cacaatgtgaagacggtcaaggcggcaaacggcaatctggtggctgtttcccgctccggt
gagctggcgcttgccgacagcgccggtcgcgagcgcgagcgctacaagctgccctacggt
gcacagatcagcgttgacgaaggtgccgaggttgaaggcggcaagatcgtcgccaaatgg
gacccgcacacccacccgatcattaccgaggtggcgggttgggtgaaactgtccggtatg
gaagatggcctgtccatccgcaagcagaccgacgaaatcaccggcctgtcctccatcgag
gtgatcgatccggcggaacgtcctgctgcgggtaaagacctgcgcccggcggtaaccctg
gtggatgagaacggtgaagaactgaccctggcgagttccagtgccccggcgcactacgcg
ctgccgccgcgcgcgatcctgagcctgaaagagggcgacaaggtgaacgtgggtgacgtt
atcgcccgtattccgcaggaatccggcggtaccaaggacatcaccggtggtctgccgcgc
gttgccgacctgttcgaagcacgtaagccgaaagagccgtccatcctggcggagatctcc
ggtaccgtgtcctttggtaaagagaccaagggcaaggtgcgtctgcagatcaccccgaaa
gacggcaagccgctggccaacggcaaggactcctacgaggtcctgattccgaagcaccgc
cagctgaccgtgttcgagggtgaaaccgtggagaagggggaggtcatttccgacggcccg
tccaacccgcacgacatcctgcgcctcaaaggcgttgaggaactggcgcgctacatcacc
aatgagatccaggaggtttaccgcctccagggtgtgaagatcaacgacaagcacatcgaa
accatcgtgcgtcagatgctgcgcaaagttgaaattctggagatgggcgattccgagttc
atcaagggtgagcaggtcgagtaccaggcggtcatcgaagaaaacgagcgcctgcgtgcc
gaaggcaagcagccggctcagtacgagcgcctgctgctgggtatcaccaaggcgtctctg
gcgaccgagtccttcctgtccgcggcctccttccaggagaccacccgcgtactgaccgaa
gcagcggtgaccggcaaggaagacagcctgcgcggcctgaaggagaacgtggttgtgggt
cgtctgatcccggccggtaccggtctcgcctaccacgccgagcgcaagcgcaagcgcacc
cagcaggtgagcttcggttatgccgaaggcccgtctgcggaagaggtggaagcggcgctg
accgaagccctgaaatcatccggggagtaa
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