Microbacterium sp. che218: CHE218_13190
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Entry
CHE218_13190 CDS
T10698
Name
(GenBank) Fpg/Nei family DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
micm Microbacterium sp. che218
Pathway
micm03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
micm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CHE218_13190
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
micm03400
]
CHE218_13190
Enzymes [BR:
micm01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
CHE218_13190
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
CHE218_13190
DNA repair and recombination proteins [BR:
micm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
CHE218_13190
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
zf-FPG_IleRS
Zn_ribbon_TFIIB
DUF7573
Ribosomal_S13
Motif
Other DBs
NCBI-ProteinID:
BFM24277
LinkDB
All DBs
Position
1402672..1403484
Genome browser
AA seq
270 aa
AA seq
DB search
MTGLRVDKATVSAINALKTYDPPLTALVGAHVTGVDRHGKFVDVSTDAGVHLVFHLAKAG
WLRWYDALPATIIKPGKTPIALRVGFDDGSGFDLTEAGTKKSLAVYAVRSPAEVPGIARL
GPDPLSEGFDRATFGSLLEGRRTQIKGVLRDQSIIAGVGNAYSDEILHATKMSPYALAAN
LSGAEVDHLYGAMTTTLAEAIEAARGKPPAELKDAKRRGMRVHGRRGEACPVCGDEVRSV
FFADNSLEYCPTCQTGGKLLADRRLSRLLK
NT seq
813 nt
NT seq
+upstream
nt +downstream
nt
gtgacagggctgcgcgtcgacaaggccaccgtgtcggccatcaacgcgctgaagacctac
gacccgccgctcaccgcgctggtcggggcccacgtgacgggtgtcgatcgccacggcaag
ttcgtcgacgtctcgaccgacgcgggcgtgcacctggtgttccacctcgccaaggcgggg
tggctgcggtggtacgacgcgctgcccgcgacgatcatcaagcccggcaagacgcccatc
gcactgcgggtcggtttcgacgacggatcggggttcgacctcaccgaggccggcaccaag
aagtcgctcgcggtgtacgccgtgcgctcccccgccgaggtgccgggcatcgcgcggctg
ggtcccgatccgctgagcgagggcttcgaccgcgcgacgttcggctcgctgctcgagggc
cgtcgcacgcagatcaagggtgtgctgcgcgaccagtcgatcatcgcgggggtcggcaac
gcctactccgacgagatcctgcacgcgaccaagatgtcgccgtacgcgctggcggcgaat
ctgtcgggcgccgaggtcgaccacctctacggcgcgatgacgacgacgctggccgaggcg
atcgaggcggcccgcggcaaaccgccggccgagttgaaggatgccaaacgccgcggcatg
cgcgtgcacgggcgacgcggcgaggcgtgccccgtctgcggcgacgaggtgcgcagcgtg
ttcttcgccgacaactccctcgagtactgccccacctgccagaccggcggcaagctgctc
gccgaccgccggctgtcgcggctgctcaagtga
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