Microbacterium sp. che218: CHE218_16350
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Entry
CHE218_16350 CDS
T10698
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
micm Microbacterium sp. che218
Pathway
micm03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
micm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CHE218_16350
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
micm03021
]
CHE218_16350
03400 DNA repair and recombination proteins [BR:
micm03400
]
CHE218_16350
Enzymes [BR:
micm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CHE218_16350
Transcription machinery [BR:
micm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CHE218_16350
DNA repair and recombination proteins [BR:
micm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CHE218_16350
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
YlqD
Motif
Other DBs
NCBI-ProteinID:
BFM24593
LinkDB
All DBs
Position
complement(1726060..1729935)
Genome browser
AA seq
1291 aa
AA seq
DB search
MLESTTFDQIRIGLATADDIRRWSFGEVKKPETINYRTLKPEKDGLFGEQIFGPSRDWEC
ACGKYKRVRFKGIVCERCGVEVTKSSVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDM
APKDLEKVIYFAAYMVISVDEDARHRDLATQENNIRLELKTLGDRRDARIAARMAKLEEE
LAALEAEGAKADQKKKVKDAAEKDMTAARKSADEQIAKLERVWEDFRTLEVGALKPEDDV
FHELQDRFGQYFEAHMGAESIKRRLEAFDLQAEADNLHLQISEGKGQRKIRAIKRLKVVN
SFLQTGMSPASMVLDVVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLRRLIDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGTGNRALKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIIVGPQLKLHQCGLPKQMALELFKPFVIKRLIDLGHSQNIKAAKRAVERYR
PEVWDVLEEIIRERPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCAAFNADFDGDQ
MAVHLPLSVEAQAEARVLMLASNNILKPSDGRPVTLPSQDMIIGLHHLTTLKEGAKGEGR
AFGSVGEAILAKDEGTLDLQAKARIRIPGLTFLEGQAPEGYEKHGLVDASLGQAIFNDTL
PKGYPFVREQADKGKLSQIVNKLAEEYPKVEVAASLDRIKDAGFYWATRSGVTVALSDIL
TPPNKAEIVAGYEKQAAKVQGQYEKGLTTDAERRQELIKIWTEATDEVQKAMRDNFPADN
TINRMVSSGARGNWLQIRNIAGMRGLVNNPKGEIIPRPIISSYREGLSVAEYFIATHGAR
KGLADTALRTADSGYLTRRLVDVSQDVIIREEDCGTSKGLELPIAAADSTGSLVKDANVE
NSVFARTLATAVVDAQGTVLAEAGDDVGDVLINKLVEGGVESIKVRSVLTCDSAVGVCAK
CYGRSLATGKIVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGSASADDITQGLPRVQELF
EARTPKGASPIAEADGRITIDETDKAKKVILTPDNGDEPVVYPVLKRATLLVEDGQHVSV
GEPILVGTLDPKEVMRVQGAREVQKYLVNGVQGVYRSQGVPIHDKHIEVIVRQMLRKVTV
VDHGDTDLLPGELVDFKRYQTINRETVGEGKRPASGRPELMGITKASLATESWLSAASFQ
ETTRVLTQAAMEGKSDPLVGLKENVIIGKLIPAGTGLAKYRNVTVEATEEAKSERYPNRI
FASDGAYSDADLSYVDFDSFSTDDFTPGTYN
NT seq
3876 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgaatcaaccactttcgatcagatccgtatcggtctggccaccgccgacgacatc
cgtcgttggtccttcggtgaggtcaagaagcccgagacgatcaactaccgcacgctgaag
cccgagaaggacggcctcttcggcgagcagatcttcggaccctcccgcgactgggagtgc
gcctgcggaaagtacaagcgcgtccgcttcaagggcatcgtctgcgagcgctgcggcgtc
gaggtcaccaagagctcggtccgtcgcgagcgcatgggccacatcgagctcgccgcgccc
gtcacgcacatctggtacttcaagggcgtcccctcgcgcctcggctacctgctcgacatg
gcgccgaaggacctcgagaaggtcatctacttcgccgcctacatggtcatctcggtcgac
gaggatgctcgtcaccgcgacctggcgacgcaggagaacaacatccgtctcgagctcaag
acgctcggcgaccgtcgtgacgcccgcatcgcggcgcgcatggccaagctggaggaggag
ctcgcggctctcgaggccgagggtgccaaggccgaccagaagaagaaggtcaaggacgcc
gccgagaaggacatgacggcggcccgcaagagcgccgacgagcagatcgccaagctcgag
cgcgtgtgggaggacttccgcacgctcgaggtgggcgccctgaagcccgaagacgacgtc
ttccacgagctccaggaccgcttcggtcagtacttcgaggcccacatgggcgcggagtcg
atcaagcgtcgtctcgaggccttcgacctgcaggccgaggccgacaacctgcacctgcag
atctccgagggcaagggccagcgcaagatccgcgcgatcaagcgcctgaaggtcgtcaac
tcgttcctgcagaccggcatgagcccggcctcgatggtgctcgacgtcgtcccggtgatc
ccgccggagcttcgtccgatggtccagctcgacggtggccgtttcgccacctccgacctg
aacgacctctaccgtcgcgtgatcaaccgcaacaaccgcctccgtcgcctgatcgacctc
ggtgcccccgagatcatcgtcaacaacgagaagcgcatgctgcaggaggccgtcgacgca
ctgttcgacaacggtcggcgtggtcgccccgtcaccggtaccggcaaccgcgccctgaag
tccctgagcgacatgctcaagggaaagcagggtcgcttccgccagaacctgctcggaaag
cgcgtggactactcgggccgttccgtcatcatcgtcgggccccagctcaagctccaccag
tgcggtctgcccaagcagatggccctggagctgttcaagcccttcgtgatcaagcgcctg
atcgacctcggtcactcgcagaacatcaaggccgccaagcgcgccgtcgagcgctaccgt
cccgaggtctgggacgtgctcgaggagatcatccgcgagcgccccgtgctgctgaaccgt
gcacccaccctgcaccgtctcggcatccaggcgttcgagccccagctcgtcgagggcaag
gcgatccagctgcacccgctcgtgtgcgcggcgttcaacgccgacttcgacggtgaccag
atggccgtccaccttcccctgtcggtcgaggctcaggccgaggcgcgcgtgctgatgctc
gcctcgaacaacatcctcaagccgtcggacggccgtccggtgacgctgccctcgcaggac
atgatcatcggtctgcaccacctgaccaccctcaaggagggtgcgaagggcgaaggccgt
gcgttcggttcggtgggcgaggcgatcctggccaaggacgagggcaccctcgacctgcag
gccaaggcgcgcatccgcatccccggcctcacgttcctcgagggccaggcgcccgagggc
tacgagaagcacggtctggtcgacgcgtcgctcggtcaggcgatcttcaacgacacgctc
ccgaagggctacccgttcgtgcgcgagcaggccgacaagggcaagctgtcgcagatcgtc
aacaagctcgccgaggagtacccgaaggtggaggtcgctgcttcgctcgaccgcatcaag
gacgccggcttctactgggccacccgttcgggtgtcacggtggcgctgagcgacatcctc
accccgccgaacaaggcggagatcgtcgcgggctacgagaagcaggccgcgaaggtccag
ggccagtacgagaagggtctcaccaccgacgccgagcgtcgtcaggagctcatcaagatc
tggaccgaggccaccgacgaggtccagaaggcgatgcgggacaacttccccgccgacaac
accatcaaccgcatggtctcgtcgggcgcccgtggtaactggctgcagatccgcaacatc
gcgggtatgcgaggcctggtgaacaaccccaagggtgagatcatcccgcgtccgatcatc
tcctcgtaccgcgagggtctgtcggtcgccgagtacttcatcgcgacccacggtgcccgt
aagggtctggccgacacggccctccgtacggccgactcggggtacctgacgcgtcgtctc
gtcgacgtctcgcaggacgtcatcatccgcgaagaggactgcggcacgtcgaagggcctc
gagctcccgatcgccgccgccgactcgaccggttcgctggtcaaggacgccaacgtcgag
aactcggtgttcgctcgcacgctcgccacggcggtcgtcgacgcgcagggcaccgtgctg
gccgaggccggcgacgacgtgggcgacgtgctcatcaacaagctggtcgaaggtggcgtg
gagtcgatcaaggtccgctccgtgctgacctgcgactcggccgtgggtgtctgcgcgaag
tgctacggccgttcgctggccaccggcaagatcgtcgacatcggcgaggccgtcggtatc
atcgcggcccagtcgatcggtgagcccggtacccagctgacgatgcgtaccttccacacc
ggtggttcggcgtcggcggatgacatcacgcagggtcttccccgtgtgcaggagctgttc
gaggcccgtacccccaagggtgcgtcgccgatcgccgaggccgacggccgcatcacgatc
gacgagaccgacaaggccaagaaggtcatcctcacgcccgacaacggcgacgagccggtg
gtctaccccgtcctgaagcgcgcgacgctcctggtcgaagacggccagcacgtctcggtc
ggcgagccgatcctggtcggaacgctcgaccccaaggaggtcatgcgcgtgcagggtgcc
cgcgaggtgcagaagtacctcgtcaacggcgtccagggcgtgtaccgctcgcagggtgtg
ccgatccacgacaagcacatcgaggtcatcgtccgacagatgctccgcaaggtcaccgtc
gtcgaccacggcgacaccgacctgctgcccggtgagctggtggacttcaagcgctaccag
accatcaaccgcgagacggtcggcgagggcaagcgccccgcgtcgggtcgtcccgagctg
atgggtatcaccaaggcgtcgctcgcgaccgagtcgtggctgtcggccgcgtcgttccag
gagaccacccgcgttctgacgcaggcggccatggagggcaagagcgacccgctggtcggc
ctcaaggagaacgtcatcatcggaaagctcatccccgccggaaccggacttgcgaagtac
cgcaacgtcacggtcgaggcgacggaagaggccaagagcgagcggtaccccaaccgcatc
ttcgcctcggacggcgcgtacagcgacgccgacctgagctacgtcgacttcgacagcttc
tcgacggacgacttcacgcccggcacgtacaactga
DBGET
integrated database retrieval system
