Microbacterium sp. che218: CHE218_33060
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Entry
CHE218_33060 CDS
T10698
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
micm Microbacterium sp. che218
Pathway
micm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
micm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CHE218_33060
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
micm03019
]
CHE218_33060
03400 DNA repair and recombination proteins [BR:
micm03400
]
CHE218_33060
Enzymes [BR:
micm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CHE218_33060
Messenger RNA biogenesis [BR:
micm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CHE218_33060
DNA repair and recombination proteins [BR:
micm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CHE218_33060
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
Dimerisation
TrmB
PcrA_UvrD_tudor
DUF3553
HEM4
MarR_2
HTH_IclR
Cas3-like_C_2
HTH_36
Tudor_1_RapA
Motif
Other DBs
NCBI-ProteinID:
BFM26264
LinkDB
All DBs
Position
complement(3492835..3494487)
Genome browser
AA seq
550 aa
AA seq
DB search
MNAPATLEQSARTAREVFGWDDLLPGQAEAIDAVIGGRDTLVVFPTGAGKSAVYQIAGCE
LGGVTVVISPLLALQRDQIDSIDAAPDAPAAVALNSRTSAAGRKRAWAAIEGPDAVYAFF
APEQLANTEVFDRLAKADVRLVVVDEAHCVSAWGHDFRPDYARIGDAVEALGHPPILALT
TTASAPVRDDIVASLGMREPHLEVRGMDRPEIHMAVRRHEHDLDKRRAVLADVQDAGGPA
LLYVATRKATDAYADELVALGVRAAPYHGAMAQKRRDEVHAAWSAGELDVVVATSAFGMG
VDKSDVRLVVHADVTESLDSYAQEIGRAARDGQPARAILHYRAEDFSLRSFFAGGHSKRA
DVAGVWDALGRAKTPLRAKAIAEESGRSARAIGRVLNQLVACGLAGSGPDGASAAKKASA
GDAVAAVRERDEAEERIRASRIEIMRGYAETSHCRRRALLEYFGVETPDECGSCDRCGTA
TTVTPIDAEPAEADADGIRIDSTVQHGEFGVGTVMGIEADRLTVFFPEHGYKVLARAAFE
SGIMELGAAA
NT seq
1653 nt
NT seq
+upstream
nt +downstream
nt
gtgaacgctcccgccactctcgaacagtccgcccgcaccgcccgcgaggtcttcgggtgg
gacgacctgcttccgggtcaagcggaggcgatcgacgccgtcatcggcgggcgcgacacc
ctcgtggtcttccccaccggcgcgggcaagtcggcggtgtaccagatcgccggctgcgag
ctgggcggggtcacggtcgtgatctcaccgctgctcgcgctgcagcgcgatcagatcgac
tcgatcgacgcggcgcccgacgctccggcggcggtcgccctgaattcgcgcaccagcgca
gcgggcaggaagcgcgcgtgggccgcgatcgagggcccggatgcggtctacgcgttcttc
gctcccgagcagctggccaacaccgaggtgttcgaccggctcgcgaaggccgacgtacgc
ctggtcgtcgtcgacgaggcgcattgcgtgtcggcgtggggccacgacttccggcccgac
tacgcccgcatcggcgacgcggtggaggcgctgggacatccgcccatcctggccctgacg
accacggcatccgcccccgtccgcgacgacatcgtggccagcctcggcatgcgcgaaccg
cacctcgaggtccgcggaatggaccgccccgagatccacatggcggtgcgccgccacgag
cacgacctcgacaagcgccgcgcggtgctcgccgatgtccaggatgccggcggcccggcg
ctgctgtacgtggcgacgcgcaaggcaaccgacgcgtacgccgacgagctcgtcgccctc
ggtgtacgcgcggcgccgtaccacggggcgatggcacagaagcggcgtgacgaggtgcac
gcggcctggagcgcgggcgagctcgacgtcgtcgtggcgacctcggcgttcggcatgggc
gtcgacaagtccgacgtgcgtctggtcgtgcacgccgacgtcaccgagtcgctcgactcg
tatgcccaagagatcggccgggcggcgcgcgacgggcagcccgcccgcgcgatcctgcac
taccgcgccgaggacttctcactgcgctccttcttcgccggtgggcacagcaagcgcgcc
gacgtggccggggtgtgggatgccctgggccgcgcgaagacgcccttgcgggcgaaggcc
atcgccgaggagtccggtcgctcggcccgtgcgatcgggcgcgtgctgaaccagctcgtc
gcgtgcggcctcgccggctccggccccgacggggcgtcggcggccaagaaggcctcggcg
ggagacgcggtcgcggccgtgcgagagcgcgatgaggcggaggagcgcatccgcgcttcg
cgcatcgagatcatgcgcggctatgccgagacctcgcactgccgccgccgcgcactgctg
gagtacttcggggtcgagacgccggatgagtgcgggtcatgcgatcgctgcggcaccgca
accacggtgaccccgatcgacgccgagcccgcggaggcggatgccgacggcatccggatc
gattcgaccgtgcagcacggcgagttcggtgtcggcacggtcatggggatcgaggccgac
cggctgaccgtgttcttccccgagcacggctacaaggtgctcgcgcgagccgccttcgag
agcggcatcatggagctcggcgcagcggcgtag
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