Micromonospora sp. SH-82: WHN02_06860
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Entry
WHN02_06860 CDS
T11153
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
micn Micromonospora sp. SH-82
Brite
KEGG Orthology (KO) [BR:
micn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
micn03032
]
WHN02_06860 (topA)
03400 DNA repair and recombination proteins [BR:
micn03400
]
WHN02_06860 (topA)
Enzymes [BR:
micn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
WHN02_06860 (topA)
DNA replication proteins [BR:
micn03032
]
Prokaryotic type
DNA Topoisomerases
WHN02_06860 (topA)
DNA repair and recombination proteins [BR:
micn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
WHN02_06860 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Toprim_4
MarR_2
Toprim_2
HC2
Motif
Other DBs
NCBI-ProteinID:
XXG09023
LinkDB
All DBs
Position
1479557..1482409
Genome browser
AA seq
950 aa
AA seq
DB search
MPSNAKTTRLVIVESPAKAKTISGYLGPGYVVEASFGHVRDLPRNAADVPAKYKGESWAR
LGVDVDNGFHALYVVSADRRQQISKLTKLAKEVDEIFLATDEDREGEAIAWHLVETLKPK
VPVKRMVFHEITKPAIQAAVANPREIDRDLVDAQEARRILDRLYGYEVSPVLWKKVMPRL
SAGRVQSVATRIVVERERQRMAFRTAEYWDILATLAVAPTGDGPRTFNATLVALNGDRIA
SGKDFEPTTGRVKPGAGVVHLDAGGARGLAARLQGRPFTVTRVEEKPYRRRPYAPFITST
LQQEAARKLRFSSQQTMRTAQRLYENGYITYMRTDSVNLSETAIAAARRQIVELYGERSV
PPEPRRYTGKVKNAQEAHEAIRPAGDNFRTPGEVAKELSVEEFKLYELIWRRTIASQMTD
AVGSSVSVRIRAVSSADEEADFGATGKTITDPGFLRAYVESSDDENAEAEDAERRLPNLV
KDQPLTADELAAQEHHTQPPSRYTEASLVKALEELGIGRPSTYASIMQTIQDRGYVVKRG
QAMIPSFLAFAVIGLMERHYPRLIDYDFTASMENELDEIAGGDHAAVDFLTSFYFGSSNG
AGDQAIARSGGLKKLVTENLSEIDARSVNSIPLFTDDEGREVVVRVGRYGPYLQREVPGA
QPAAPAEGEEGGTPGDRAPIPEGLAPDELTREKVHELFLGGSGERKLGDDPATGEPIVLK
SGRFGPYVSSGERKSSLLRSQSPDSLTFDQALKLLTLPRVVGVAPDGAEVLANNGRYGPY
VKQGDEFRSLDSEEKMFTVTLDEALALLAAPKARQRRAAAPPLREMGVDPLTEKPLVIKD
GRFGPYVTDGETNASLRRAQTPEALTIEEASEMLAEKRAKGPAPKKKATKKAPAKKATKS
TTTKSTAKSTAAKSTATKATAAKKAPAKATASKAPAAKKAAPAKAPTPAD
NT seq
2853 nt
NT seq
+upstream
nt +downstream
nt
gtgccgagcaacgccaagaccacccgtctggtcatcgtcgagtcaccggcgaaggccaag
acgatctcgggctacctcggcccggggtacgtcgtggaggccagcttcggtcacgtccgc
gacctgccgcgcaacgccgccgacgtgcccgcgaagtacaagggcgagtcctgggcccgg
ctcggggtcgacgtggacaacgggttccacgcgctctacgtggtctctgcggaccgccgc
cagcagatcagcaagctgaccaagctggccaaggaggtcgacgagatcttcctggccact
gacgaggaccgcgagggcgaggcgatcgcctggcacctggtggagaccctcaagcccaag
gtgccggtcaagcggatggtcttccacgagatcaccaagccggcgatccaggctgcggtg
gccaacccccgggagatcgacagggacctggtcgacgcccaggaggcgcggcggatcctc
gaccggctctacggctacgaggtctccccggtgctgtggaagaaggtcatgccgaggctc
tcggcgggccgggtgcagtccgtggcgacccggatcgtggtcgagcgggaacggcagcgg
atggccttccgcaccgccgagtactgggacatcctggccaccctcgccgtcgcccccacc
ggtgacggtccgcgtaccttcaacgccacactcgtcgcgctcaacggcgaccggatcgcc
agcggcaaggacttcgagccgaccaccggccgggtcaagcccggcgccggggtggtccac
ctggacgccggtggtgcccgggggctggccgcccgtctccaggggcggccgttcactgtc
acccgggtcgaggagaagccctaccggcgtcgcccgtacgccccgttcatcacctccacc
ctccagcaggaggcggcccgcaagctgcggttctcgtcccagcagacgatgcgtaccgcg
cagcggctctacgagaacggctacatcacctacatgcgtaccgactcggtgaacctgtcg
gagaccgccatcgcggcggcccgccggcagatcgtcgagctgtacggcgagcgcagcgtg
ccgccggagccgcgccgctacacgggcaaggtcaagaacgcccaggaggcgcacgaggcg
atccgtcccgccggggacaacttccgcaccccgggcgaggtcgccaaggaactgtcagtc
gaggagttcaagctctacgagctgatctggcggcggaccatcgcctcgcagatgaccgac
gcggtcggctccagcgtctcggtccggatccgggccgtctcctccgccgacgaggaggcg
gacttcggggccaccggcaagaccatcaccgacccgggcttcctgcgcgcgtacgtcgag
tccagcgacgacgagaacgccgaggccgaggacgccgagcgtcgtctgcccaacctcgtc
aaggaccagccgctgaccgccgacgagttggccgcccaggaacaccacacccagccgccc
tcccggtacacggaggcgtcgctggtcaaggccctggaggagctgggcatcggtcgtccc
tccacgtacgcctcgatcatgcagaccatccaggaccgcgggtacgtcgtcaagcgcggt
caggctatgatcccgtcgttcctggcgttcgcggtgatcgggctgatggaacggcactac
ccccgcctgatcgactacgacttcaccgccagcatggagaacgagctggacgagatcgcc
ggaggcgaccacgccgccgtcgacttcctcacctcgttctacttcggcagcagcaacggc
gccggtgaccaggccatcgcccggtccggtgggctgaagaagctggtcaccgagaacctc
agcgagatcgacgcccgcagcgtcaactcgatcccgctcttcaccgacgacgagggccgc
gaggtggtggtccgggtcggccggtacggcccctacctgcaacgggaggtgccgggcgca
cagccggccgcccccgccgagggcgaggagggcggtacccccggcgaccgggcaccgatt
cccgaggggctggcccccgacgaactgacccgggagaaggtgcacgagctgttcctcggc
ggcagcggcgagcgcaagctcggcgacgacccggccaccggggagccgatcgtgctcaag
tccggccggttcggcccgtacgtctccagcggcgaacgcaagtcgtccctgctgcgctcc
cagtcgcccgactcgctcaccttcgaccaggcgttgaagctgctcaccctcccccgagtg
gtgggcgtggcacccgacggtgccgaggtgctcgccaacaacggcaggtacggcccctac
gtcaagcagggcgacgagttccgttcactggactccgaagagaagatgttcaccgtcacc
ctcgacgaggcgctggcgctgctggccgccccgaaggcccgtcagcgtcgggccgctgcg
ccgccgctgcgggagatgggcgtggaccccctcaccgagaagcctttggtcatcaaggac
ggccggttcggcccgtacgtcaccgacggggagaccaacgcgtccctgcgccgggcgcag
acgccggaggcgctgaccatcgaggaggcctccgagatgctcgccgagaagcgggcgaag
ggaccggccccgaagaagaaggccacgaagaaggcaccggcgaagaaggccaccaagtcg
accaccaccaagtcgacggccaagtccacggcggccaagtccacggcgaccaaggcgact
gcggcgaagaaggcccccgccaaggcgaccgcatcgaaggcccccgccgcgaagaaggcc
gcccctgccaaggcccccacccccgccgactga
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